Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0294
(732 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 383 e-107
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 378 e-105
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 321 3e-88
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 266 2e-71
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 193 1e-49
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 117 1e-26
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 101 6e-22
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 6e-13
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 41 0.001
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_41920| Best HMM Match : Filamin (HMM E-Value=0.00015) 31 0.73
SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3) 31 0.96
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 30 1.7
SB_19079| Best HMM Match : LCM (HMM E-Value=6.3e-37) 29 3.9
SB_58645| Best HMM Match : Kelch_1 (HMM E-Value=1.9) 29 3.9
SB_23352| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_27085| Best HMM Match : Filamin (HMM E-Value=1.5) 29 5.1
SB_9053| Best HMM Match : TIG (HMM E-Value=0) 29 5.1
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01) 28 6.8
SB_24809| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88) 28 9.0
SB_32880| Best HMM Match : rve (HMM E-Value=3.4e-05) 28 9.0
SB_14214| Best HMM Match : AmoC (HMM E-Value=3.2) 28 9.0
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 383 bits (943), Expect = e-107
Identities = 181/217 (83%), Positives = 198/217 (91%)
Frame = +3
Query: 66 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSHVAFTDTERLIGDAAKNQVA 245
MAK PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPS+VAF+DTERLIGDAAKNQVA
Sbjct: 1 MAKTPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVA 60
Query: 246 MNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVS 425
MNP NT+FDAKRLIGRKF+D V DM HWPF V+ +G +PKI+V +KGE K+FFPEE+S
Sbjct: 61 MNPENTVFDAKRLIGRKFDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFFPEEIS 120
Query: 426 SMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISSLNVLRIINEPTAAA 605
SMVLTKMKETAEAYLG V +AV+TVPAYF+DSQRQATKDAGTI+ LNVLRIINEPTAAA
Sbjct: 121 SMVLTKMKETAEAYLGAKVTDAVVTVPAYFHDSQRQATKDAGTIAGLNVLRIINEPTAAA 180
Query: 606 IAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIF 716
IAYGLDKK ERNVLI+DLGGGTFDVS+LTIEDGIF
Sbjct: 181 IAYGLDKKVGVERNVLIYDLGGGTFDVSVLTIEDGIF 217
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 378 bits (930), Expect = e-105
Identities = 177/215 (82%), Positives = 199/215 (92%)
Frame = +3
Query: 66 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSHVAFTDTERLIGDAAKNQVA 245
M KAPA+GIDLGTTYSCVGVFQ+GKVEIIANDQGNRTTPS+V FTDTERL+GDAAKNQVA
Sbjct: 1 MGKAPAIGIDLGTTYSCVGVFQNGKVEIIANDQGNRTTPSYVGFTDTERLVGDAAKNQVA 60
Query: 246 MNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVS 425
+NP NTIFDAKRLIGR+++DATVQ+DMK WPF+++SD KPKI+V YKGE KTF EE+S
Sbjct: 61 LNPENTIFDAKRLIGRRYDDATVQSDMKLWPFKIISDNNKPKIQVEYKGERKTFAAEEIS 120
Query: 426 SMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISSLNVLRIINEPTAAA 605
SMVL KMKETAEAYLG+ V +AVITVPAYFNDSQRQATKDAGTI+ LNVLR+INEPTAAA
Sbjct: 121 SMVLGKMKETAEAYLGQKVTSAVITVPAYFNDSQRQATKDAGTIAGLNVLRVINEPTAAA 180
Query: 606 IAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDG 710
+AYGLDK +GE+NVLIFDLGGGTFDVSILTI+DG
Sbjct: 181 LAYGLDKSLSGEKNVLIFDLGGGTFDVSILTIDDG 215
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 321 bits (789), Expect = 3e-88
Identities = 152/212 (71%), Positives = 183/212 (86%), Gaps = 1/212 (0%)
Frame = +3
Query: 84 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSHVAFTDT-ERLIGDAAKNQVAMNPNN 260
+GIDLGTTYSCVGVF++G+VEIIANDQGNR TPS+VAFT+ ERLIGD AKNQ+ NP N
Sbjct: 704 IGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTEEGERLIGDGAKNQLTTNPEN 763
Query: 261 TIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLT 440
T+FDAKRLIGR ++D +VQ D+K +PF+VV KP ++V K E KTF EE+S+MVLT
Sbjct: 764 TVFDAKRLIGRSWDDTSVQNDLKFFPFKVVDKNKKPHVQVKVKDEIKTFAAEEISAMVLT 823
Query: 441 KMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISSLNVLRIINEPTAAAIAYGL 620
KMKETAEAYLGK V +AV+TVPAYFND+QRQATKDAG I+ L V+RIINEPTAAAIAYG+
Sbjct: 824 KMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGAIAGLTVMRIINEPTAAAIAYGM 883
Query: 621 DKKGTGERNVLIFDLGGGTFDVSILTIEDGIF 716
DKK GE+N+L+FDLGGGTFDVS+LTI++G+F
Sbjct: 884 DKK-EGEKNILVFDLGGGTFDVSLLTIDNGVF 914
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 266 bits (651), Expect = 2e-71
Identities = 135/187 (72%), Positives = 147/187 (78%), Gaps = 25/187 (13%)
Frame = +3
Query: 66 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSHVAFTDTERLIGDAAKNQVA 245
M KAPA+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPS+VAFTD ERL+GDAAKNQVA
Sbjct: 1 MTKAPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDEERLVGDAAKNQVA 60
Query: 246 MNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEV- 422
MNP NTIFDAKRLIGR+F+D V+ DMKHW FEVV++ G+PK+KV YKGE KTFF EEV
Sbjct: 61 MNPTNTIFDAKRLIGRRFDDPGVKDDMKHWSFEVVNEAGRPKVKVEYKGETKTFFAEEVV 120
Query: 423 ------------------------SSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQR 530
SSMVL KMKETAEAYLG V +AV+TVPAYFNDSQR
Sbjct: 121 NEAGRPKVKVEYKGETKTFFAEEISSMVLNKMKETAEAYLGCKVTDAVVTVPAYFNDSQR 180
Query: 531 QATKDAG 551
QATKDAG
Sbjct: 181 QATKDAG 187
Score = 173 bits (420), Expect = 2e-43
Identities = 85/100 (85%), Positives = 91/100 (91%)
Frame = +3
Query: 417 EVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISSLNVLRIINEPT 596
++SSMVL KMKETAEAYLG V +AV+TVPAYFNDSQRQATKDAG IS LNVLRIINEPT
Sbjct: 211 QISSMVLNKMKETAEAYLGCKVTDAVVTVPAYFNDSQRQATKDAGVISGLNVLRIINEPT 270
Query: 597 AAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIF 716
AAAIAYGLDKK ERNVLIFDLGGGTFDVS+L+IEDGIF
Sbjct: 271 AAAIAYGLDKKVGQERNVLIFDLGGGTFDVSVLSIEDGIF 310
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 193 bits (470), Expect = 1e-49
Identities = 101/218 (46%), Positives = 138/218 (63%), Gaps = 3/218 (1%)
Frame = +3
Query: 72 KAPAVGIDLGTTYSCVGVFQ--HGKVEIIANDQGNRTTPSHVAFTDTERLIGDAAKNQVA 245
K +GIDLGTTYSCVG +Q G+++I +++ ++ PS VAFTD L+G+ A +Q
Sbjct: 30 KPKIIGIDLGTTYSCVGAYQAISGRIDIFSDENDDKVVPSLVAFTDKGVLVGEKALSQAE 89
Query: 246 MNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDG-GKPKIKVAYKGEDKTFFPEEV 422
+NP NTI+DAKR IG+ F + K + F V +D G V KG PEE+
Sbjct: 90 INPKNTIYDAKRFIGKTFTKQELLEIGKLYQFRVTTDKRGNAGFLVGKKGNFTVITPEEI 149
Query: 423 SSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISSLNVLRIINEPTAA 602
V+ K++ AE L TV AV++VPA F+ QR AT A +++ + VLR+INEPTAA
Sbjct: 150 GGYVIKKLRTMAERNLTTTVTKAVMSVPAEFDIKQRNATVKAASLAGITVLRVINEPTAA 209
Query: 603 AIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIF 716
A+AYGL KK G NV++ DLGGGT DVS+L I+ G+F
Sbjct: 210 ALAYGLHKK-EGVANVMVVDLGGGTLDVSLLNIQGGMF 246
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 117 bits (281), Expect = 1e-26
Identities = 63/158 (39%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Frame = +3
Query: 249 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVS-DGGKPKIKVAYKGEDKTFFPEEVS 425
N NTI KR IGRKF D VQ ++ H P++VV I+V Y G+ + F PE+V
Sbjct: 118 NLKNTISQFKRFIGRKFSDPAVQKEIPHLPYKVVELPNDSIGIQVQYLGKQEVFSPEQVM 177
Query: 426 SMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISSLNVLRIINEPTAAA 605
+M+ T++K TAE L V + VI+VP+Y+ D QR+ DA + LN LR++N+ TA +
Sbjct: 178 AMLFTRLKTTAEIALKTKVTDCVISVPSYYTDRQRRCMLDASATAGLNCLRLMNDTTAVS 237
Query: 606 IAYGLDKKG---TGERNVLIFDLGGGTFDVSILTIEDG 710
+AYG+ K+ RNV+ D+G + V I G
Sbjct: 238 LAYGIYKQDLPTDKPRNVVFVDIGHSSLQVCITAFLKG 275
Score = 48.0 bits (109), Expect = 8e-06
Identities = 22/52 (42%), Positives = 32/52 (61%)
Frame = +3
Query: 84 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSHVAFTDTERLIGDAAKNQ 239
VG D+G + V + G +E +AN+ +R TPS V+ D +RLIG + KNQ
Sbjct: 4 VGFDVGNQSCYIAVARGGGIETVANEFSDRCTPSFVSLGDKQRLIGTSGKNQ 55
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 101 bits (242), Expect = 6e-22
Identities = 62/118 (52%), Positives = 77/118 (65%), Gaps = 26/118 (22%)
Frame = +3
Query: 372 IKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAG 551
I V GE ++F PE++S++VL ++K AEA+LG+ V+ AVITVPA+FND+QRQATKDAG
Sbjct: 2 IAVEVCGEKRSFAPEQISAVVLEQLKADAEAFLGQAVKRAVITVPAHFNDAQRQATKDAG 61
Query: 552 TISSLN------------------------VLRIINEPTAAAIAYGLDKK--GTGERN 647
TI+ L+ VLRIINEPTAAAIAYGLDK G ERN
Sbjct: 62 TIAGLDVLSRTASERPPSRFRRRRPHGRSRVLRIINEPTAAAIAYGLDKARGGKAERN 119
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 71.7 bits (168), Expect = 6e-13
Identities = 38/114 (33%), Positives = 66/114 (57%), Gaps = 4/114 (3%)
Frame = +3
Query: 366 PKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKD 545
P +K Y+ D TF PEE+ M+L + E + +++ V+TVP +FN ++R+A
Sbjct: 68 PHVK-NYQQSDVTFTPEELMGMILNHSRFIGEQFADHPIKDVVLTVPPFFNQAERRALLR 126
Query: 546 AGTISSLNVLRIINEPTAAAIAYGLDKK----GTGERNVLIFDLGGGTFDVSIL 695
A + LNVL+I+N TA A+ YGL ++ T E++ + +D+G + +I+
Sbjct: 127 AAELVGLNVLQIMNSNTAVALNYGLFQQKSFNDTLEKHFMFYDMGASSTVATIV 180
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +3
Query: 135 GKVEIIANDQGNRTTPSHVAFTDTERLI 218
G IIAND G+R TP+ VAF+DTE+LI
Sbjct: 83 GNTTIIANDAGDRVTPAMVAFSDTEKLI 110
>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 39.1 bits (87), Expect = 0.004
Identities = 14/23 (60%), Positives = 20/23 (86%)
Frame = +3
Query: 648 VLIFDLGGGTFDVSILTIEDGIF 716
+ ++DLGGGTFD+SIL I+ G+F
Sbjct: 2 IAVYDLGGGTFDISILEIQKGVF 24
>SB_41920| Best HMM Match : Filamin (HMM E-Value=0.00015)
Length = 600
Score = 31.5 bits (68), Expect = 0.73
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 654 IFDLGGGTFDVSILTIEDGIFRGEI 728
+FDLG G+++V L +E G++R +I
Sbjct: 311 VFDLGNGSYEVLFLVMEPGVYRVDI 335
>SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3)
Length = 350
Score = 31.1 bits (67), Expect = 0.96
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = -1
Query: 252 GSSPPGSWRHLR*DARCL*TQHETEWSCCPGRW 154
GS PPG W R +AR T ET +SC PG W
Sbjct: 206 GSCPPGFWCRKRREARAA-TDLET-YSCPPGFW 236
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/25 (60%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +3
Query: 144 EIIANDQGNRTTPSHVAFT-DTERL 215
++I N +G+RTTPS VAFT + ERL
Sbjct: 7 KVIENAEGSRTTPSVVAFTPEGERL 31
>SB_19079| Best HMM Match : LCM (HMM E-Value=6.3e-37)
Length = 420
Score = 29.1 bits (62), Expect = 3.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 270 RILCCWGSSPPGSWRH 223
R++CC G SP WRH
Sbjct: 395 RVVCCQGDSPSPRWRH 410
>SB_58645| Best HMM Match : Kelch_1 (HMM E-Value=1.9)
Length = 340
Score = 29.1 bits (62), Expect = 3.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 270 RILCCWGSSPPGSWRH 223
R++CC G SP WRH
Sbjct: 170 RVVCCQGDSPSPRWRH 185
>SB_23352| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1830
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +2
Query: 176 HSVSCCVH--RHRASHRRCRQEPGGDEPQQHNI-RCQTSHR 289
H VSC R RASHR C + P P++H + R + +H+
Sbjct: 798 HFVSCSRRWPRGRASHRACARAPKMPPPERHALTRLRHTHQ 838
>SB_27085| Best HMM Match : Filamin (HMM E-Value=1.5)
Length = 634
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +3
Query: 648 VLIFDLGGGTFDVSILTIEDGIF 716
V I+DLG GT++++IL E G++
Sbjct: 319 VPIYDLGNGTYEMAILFHEPGVY 341
>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
Length = 2990
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 12 HVC*VVLRTSNKTD*KYKMAKAPAVGIDL 98
HVC +V T K K ++K PA GI+L
Sbjct: 1200 HVCNIVSNTETKITCKLDVSKTPAPGIEL 1228
>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = -3
Query: 460 SAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSACTVASSNLRPMR 281
S F+F ST + +S +KV+ SPL + + P+ G S C V NL
Sbjct: 1108 SPAKFVFTSTGIVRASTRKVVPSPLRRSKVPPTVPAQRLFNGDRVESICNV--QNLSRCP 1165
Query: 280 RLASNIVL 257
++++ VL
Sbjct: 1166 KISNATVL 1173
>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
Length = 1776
Score = 28.3 bits (60), Expect = 6.8
Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 14/95 (14%)
Frame = +2
Query: 395 RQNLFPRGSQFHGAYENEGNCRSLSRQNCAECSY---HG----SRVLQ*LSKTSHKRCRY 553
R+++FP+G H +Y C L R S+ HG S L+ K + C +
Sbjct: 1366 RRHVFPKGHVAHRSYHVYSICALLRRYRLTHSSFLLHHGQTGNSGTLRSFCKFIMRECGW 1425
Query: 554 HLKLERSPN---HQ*T----HCCCDCLRS*QKGYW 637
++ HQ CCC C R + YW
Sbjct: 1426 RVRAGTDACVIFHQFDDAIRECCCLCCRGRRGKYW 1460
>SB_24809| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 780
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 730 WISPRKIPSSMVRMDTSKVPPPRSKISTFRSPVP 629
W + IPS MVR ++ +P P +K ++ P P
Sbjct: 197 WQTLAAIPSPMVRQTSTAIPSPMAKETSTAMPSP 230
>SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
Length = 953
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = +2
Query: 152 RQRPGQQDHSVSCCVHRHRASHRRCRQEPGG---DEPQQHNIRCQTSHRT*VRRCYCASR 322
RQ + ++ H R +R+ ++ GG +EP + R T T C+CA R
Sbjct: 267 RQSAPSRSMAIINKTHGKRHGYRKLSRDCGGRRPNEPYERTARVHTILSTDTETCFCAKR 326
>SB_32880| Best HMM Match : rve (HMM E-Value=3.4e-05)
Length = 1264
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = +2
Query: 197 HRHRASHRRCRQEPGG---DEPQQHNIRCQTSHRT*VRRCYCASRHEALA 337
H R +R+ + GG +EP + R T T C+CA R+ + A
Sbjct: 421 HGERHGYRKLSRVCGGRRPNEPYERTARVHTILSTDTETCFCAKRYGSAA 470
>SB_14214| Best HMM Match : AmoC (HMM E-Value=3.2)
Length = 451
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -3
Query: 334 QCFMSACTVASSNLRPMRRLASNIVLLGFIATWFLAASPMRRSVSVNAT 188
QCF+S C + S + + R+ L TW + + M S +AT
Sbjct: 169 QCFLSVCDLCCSLMTQIPRMRHTWDFLEHAPTWISSQTSMSFSAITDAT 217
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,505,391
Number of Sequences: 59808
Number of extensions: 560919
Number of successful extensions: 1857
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1850
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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