Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0288
         (622 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   2.1  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   2.1  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.1  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   8.3  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   8.3  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 346 GVARTLWSHHDFRET 302
           GV R  W H DFR +
Sbjct: 77  GVGRKAWKHLDFRNS 91


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 346 GVARTLWSHHDFRET 302
           GV R  W H DFR +
Sbjct: 77  GVGRKAWKHLDFRNS 91


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -2

Query: 504 CSYFFTITYIISL*IVYCIVGIFFINLMHTLLIFGF 397
           C Y+F   +I+    +  +V I++   MH L    F
Sbjct: 237 CIYYFYYAFILFTVHLLLLVCIYYFYYMHLLFCCAF 272



 Score = 21.8 bits (44), Expect = 4.8
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 504 CSYFFTITYII-SL*IVYCIVGIFFINLMHTLLI 406
           C Y F   +II ++ +++C   IFF   MH L +
Sbjct: 165 CIYHFFCAFIIFTMHLLFCCAFIFF--NMHLLFL 196



 Score = 21.0 bits (42), Expect = 8.3
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 581 FCNRYILYETHKY 543
           FC  +I++ TH Y
Sbjct: 301 FCRAFIIFPTHFY 313


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 495 FFTITYIISL*IVYCIVGIFFINLMHTLLI 406
           FF I  II L I+YCI+    ++   TL++
Sbjct: 245 FFIIPLIILL-ILYCIIAKNLMSNAATLVL 273


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 12  TGPNTYRLLCYHYFTVGRGLALLKSMGDGNHSP 110
           T P  +   C+  F V  G+AL+  +G+    P
Sbjct: 595 TNPGYWLFHCHIEFHVEVGMALVFKIGEDYEMP 627


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,641
Number of Sequences: 336
Number of extensions: 3218
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)