Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0288
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    25   6.7  
SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.8  

>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = +1

Query: 244 YAQLKSTQVGLDHSL 288
           YAQ++S ++GLDHS+
Sbjct: 38  YAQVESVRLGLDHSV 52


>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 255

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +3

Query: 105 SPSDGTYARLLTRAIKKNFPFLLHKAGYDCRQGVIKLFLITAMIN 239
           S  + T A++  +A+    PFL+++A  D +  +I L  +  +IN
Sbjct: 68  SKRNATPAKIAWQAMTTREPFLVYQAKADKKISLIYLLTVGMLIN 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,555,366
Number of Sequences: 5004
Number of extensions: 51580
Number of successful extensions: 112
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)