Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0288
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0454 + 21383068-21384525                                         29   3.9  
06_03_1207 + 28418473-28421073                                         28   6.9  
06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281     28   6.9  
04_04_1451 + 33695734-33695806,33695946-33696179,33696341-336964...    28   6.9  
11_05_0108 + 19123855-19124163,19125483-19126019                       27   9.1  
04_03_0585 + 17570853-17571404                                         27   9.1  
02_05_0067 + 25557975-25558553                                         27   9.1  

>05_04_0454 + 21383068-21384525
          Length = 485

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 322 HHDFRETDSYTRGSGQGQLGWTLVGHNR 239
           HH +R+ +SY  G GQ Q G++     R
Sbjct: 349 HHGYRKPESYQGGQGQLQYGYSAPNRQR 376


>06_03_1207 + 28418473-28421073
          Length = 866

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
 Frame = +3

Query: 9   GTGPN--TYRLL---CYHYFTVGRGLALLKSMGDGNHSPSDGTYARLLTRAIKKNFPFL 170
           G  P+  TY +L   C H   + R  + LK M   +  P+  TY  LL   +K N  ++
Sbjct: 609 GVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYV 667


>06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281
          Length = 518

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 376 NADSQSGAIDGVARTLWSHHDFRETDSYTRGSGQG 272
           NA S +G + G   + WS      T S   G GQG
Sbjct: 446 NAGSNTGTLSGAGSSNWSSSTSGSTSSSGLGGGQG 480


>04_04_1451 +
           33695734-33695806,33695946-33696179,33696341-33696434,
           33696532-33696749,33696859-33696992,33697098-33697325,
           33697417-33697845
          Length = 469

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 33  LLCYHYFTVGRGLALLKSMGDG 98
           ++ + Y T+G GL L K++GDG
Sbjct: 188 IMSFAYSTIGLGLGLAKTIGDG 209


>11_05_0108 + 19123855-19124163,19125483-19126019
          Length = 281

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -1

Query: 403 WVLKLALYINADSQSGAIDGVARTLWSHHDFRETDSYTR 287
           WV+++  YI+ D+     + +AR   SHH       Y +
Sbjct: 116 WVVEIERYISGDAGGVTSEAMARGSKSHHSIYRVPEYIK 154


>04_03_0585 + 17570853-17571404
          Length = 183

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 125 CSSAYKGNKKKLPILTS*GWLRLSARSNKAISYNGNDKSVM 247
           C   Y  N + L +  S GW    +R  K++  N N +SV+
Sbjct: 89  CDEMYHSNTE-LVVALSTGWYAGGSRCGKSVRINANGRSVL 128


>02_05_0067 + 25557975-25558553
          Length = 192

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 125 CSSAYKGNKKKLPILTS*GWLRLSARSNKAISYNGNDKSVM 247
           C   +  N +++  L++ GW     R NK I  N N +SV+
Sbjct: 98  CDGKFHKNTERVVALST-GWYANGRRCNKNIRINANGRSVL 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,449,812
Number of Sequences: 37544
Number of extensions: 338104
Number of successful extensions: 768
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)