Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0288
         (622 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.081
SB_58401| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_2049| Best HMM Match : Ribosomal_LX (HMM E-Value=0.98)              30   1.7  
SB_46526| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_23071| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_14152| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_4446| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  

>SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2250

 Score = 34.3 bits (75), Expect = 0.081
 Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
 Frame = +2

Query: 119  NVCSSAYKGNKKKLPILTS*GWLRLSARSNKAISYNGNDKS--VMPN*SPPKLALTTPSC 292
            +V   AY GN+ +  + +S GW+R+  +S+++I+  G + +  ++ +  PP +    P C
Sbjct: 1222 DVDQDAYCGNRTRFNVTSSCGWVRIRFKSDESITGRGFNATYRIIRDRKPPVITCLGPDC 1281


>SB_58401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = -1

Query: 394 KLALYINADSQSGAIDGVARTLWSHHDFRETDSYTRGSGQGQLGWTLVGHNRFIIAV 224
           KL +++N  +    +  +   +W+  D  + DS+   SG     WT++G   F+  V
Sbjct: 271 KLYVHVNQFALLSGLAVLGIGIWTKVDAGQFDSFLGSSGYSIPAWTMIGAGAFVTFV 327


>SB_2049| Best HMM Match : Ribosomal_LX (HMM E-Value=0.98)
          Length = 731

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 99  NHSPSDGTYARLLTRAIKKNFPFLLHKAGYDCRQGVIKLFLITAMINRLC 248
           + S  DGT A+ +TRA+++ +  +    G D  Q   K  L    ++R+C
Sbjct: 108 HQSGQDGTLAQSITRAVRQPWTAVSSLLGPDAHQPCYKHLLACLGVDRVC 157


>SB_46526| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +3

Query: 45  HYFTVGRGLALLKSMGDGNHSPSDGTYARLLTRAI 149
           HY T   GL+        NH+P  G Y RLLT  I
Sbjct: 106 HYKTAKPGLSDSNDHDHNNHAPFSGFYRRLLTLMI 140


>SB_23071| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1208

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 358  GAIDGVARTLWSHHDFRETDSYTRGSGQGQLGWTLV 251
            G I G+ RT+WS    RE   YT    Q    W+++
Sbjct: 1110 GVIGGITRTIWSARRTREMPVYTAFVIQPSKLWSMI 1145


>SB_14152| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 594

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = +2

Query: 179 GWLRLSARSNK-AISYNGNDKSVMPN*SP---PKLALTTPSCVGIGFSEVMVAPKSSSDP 346
           GW+ L A   K A+ YN +D +  PN +      L  T  S   +GF    V+P ++++ 
Sbjct: 272 GWIWLLAMEGKNALKYNASDHTTWPNVNSRYVTSLYFTLTSLTTVGFGN--VSPNTNAEK 329

Query: 347 IY 352
            +
Sbjct: 330 AF 331


>SB_4446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 422

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 185 LRLSARSNKAISYNGNDKSVMPN 253
           +R SA SN  +S +GNDKS  P+
Sbjct: 316 VRKSASSNSLVSLSGNDKSESPS 338


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,045,975
Number of Sequences: 59808
Number of extensions: 388742
Number of successful extensions: 718
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)