Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0288
         (622 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic acetylch...    24   4.5  
AY062198-1|AAL58559.1|  153|Anopheles gambiae cytochrome P450 CY...    23   7.8  
AJ697727-1|CAG26920.1|  285|Anopheles gambiae putative odorant-b...    23   7.8  

>AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 2 protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 124 YVPSDGEWLPSPMDFSNA 71
           YVPS+  WLP  + ++NA
Sbjct: 111 YVPSEHIWLPDIVLYNNA 128


>AY062198-1|AAL58559.1|  153|Anopheles gambiae cytochrome P450
           CYP4J5 protein.
          Length = 153

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 69  LALLKSMGDGNHSPSDGTYARLLTRAIKK 155
           LA    + DG+ SP+D   A+   R IK+
Sbjct: 41  LATQNDLTDGHLSPNDLNSAKFFDRVIKE 69


>AJ697727-1|CAG26920.1|  285|Anopheles gambiae putative
           odorant-binding protein OBPjj17 protein.
          Length = 285

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 346 GVARTLWSHHDFRETDSYTRGSGQGQLG 263
           G  RT    +D+ + D Y+RG    Q G
Sbjct: 232 GRGRTESPRYDYDDNDGYSRGGQYDQRG 259


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 650,400
Number of Sequences: 2352
Number of extensions: 12640
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 60214320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)