Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0288
         (622 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT003529-1|AAO39533.1|  987|Drosophila melanogaster RE18590p pro...    30   2.2  
AE013599-3305|AAF46783.2|  674|Drosophila melanogaster CG33227-P...    30   2.2  
AE014297-3112|AAF55965.1|  189|Drosophila melanogaster CG13860-P...    28   8.9  

>BT003529-1|AAO39533.1|  987|Drosophila melanogaster RE18590p
           protein.
          Length = 987

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 388 ALYINADSQSGAIDGVARTLWSHHDF 311
           +LY+  DS++G+  G +   W+H+DF
Sbjct: 523 SLYVQFDSKTGSYSGSSLYYWAHYDF 548


>AE013599-3305|AAF46783.2|  674|Drosophila melanogaster CG33227-PB
           protein.
          Length = 674

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 388 ALYINADSQSGAIDGVARTLWSHHDF 311
           +LY+  DS++G+  G +   W+H+DF
Sbjct: 210 SLYVQFDSKTGSYSGSSLYYWAHYDF 235


>AE014297-3112|AAF55965.1|  189|Drosophila melanogaster CG13860-PA
           protein.
          Length = 189

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 284 PSCVGIGFSEVMVAPKSSSDPIYGP 358
           PSC G G     V P S S P+Y P
Sbjct: 59  PSCSGTGLVSSSVMPTSHSQPLYVP 83


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,416,389
Number of Sequences: 53049
Number of extensions: 564065
Number of successful extensions: 1146
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2559155400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)