Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0288
         (622 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79756-4|CAB02116.2|  478|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z83120-5|CAB05588.1| 1467|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U88308-10|AAB42326.2|  268|Caenorhabditis elegans Hypothetical p...    27   8.2  

>Z79756-4|CAB02116.2|  478|Caenorhabditis elegans Hypothetical
           protein F53C11.7 protein.
          Length = 478

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -1

Query: 403 WVLKLALYINADSQSGAIDGVARTLWSHHDFRETD-SYTRGSGQ 275
           W L+    I     + AIDG  RT    HD    D S++RGS Q
Sbjct: 283 WQLETGQAIGTTRPTAAIDGTVRTQLIAHDKEVFDISFSRGSAQ 326


>Z83120-5|CAB05588.1| 1467|Caenorhabditis elegans Hypothetical
           protein R06A4.8 protein.
          Length = 1467

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 253 LKSTQVGLDHSLVCRNRFL*SHGGSKEFERPHLWPH 360
           LK +QV L   LVC    +  + G+KE + P LW +
Sbjct: 464 LKESQVYLRRELVCWGDSVKLNYGNKEADSPFLWQY 499


>U88308-10|AAB42326.2|  268|Caenorhabditis elegans Hypothetical
           protein C32E8.9 protein.
          Length = 268

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 35  TLLSLFHGRPRLGITKIHGRR*PLTIRWNVCSS 133
           ++LSL H  P + I KIHG    L     +CSS
Sbjct: 108 SILSLLHSSPAISIAKIHGH--ALGGATEICSS 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,103,409
Number of Sequences: 27780
Number of extensions: 288512
Number of successful extensions: 584
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)