Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0288
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   0.79 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   1.4  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   2.4  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   4.2  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   5.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.5  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   7.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.7  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 124 YVPSDGEWLPSPMDFSNA 71
           YVPS+  WLP  + ++NA
Sbjct: 109 YVPSENIWLPDIVLYNNA 126


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 124 YVPSDGEWLPSPMDFSNA 71
           YVPS+  WLP  + ++NA
Sbjct: 96  YVPSEHIWLPDIVLYNNA 113


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 451 TIHNLQRYNICNSKKI 498
           TIHN   YN  N+KK+
Sbjct: 311 TIHNNNNYNNYNNKKL 326


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 427 INKKNTYYTIHNLQRYNICNSKKIGAPV 510
           I+  N Y   +    YNI N ++I  PV
Sbjct: 323 IHNNNNYKNYNKKLYYNIINIEQIPVPV 350


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 293 HTREWSRPTWV 261
           HT+ W RP W+
Sbjct: 224 HTKIWLRPDWL 234


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 124 YVPSDGEWLPSPMDFSNA 71
           +VPS+  WLP  + ++NA
Sbjct: 96  HVPSEHIWLPDIVLYNNA 113


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 106 EWLPSPMDFSNAKPRP 59
           E +P+P+ + N  PRP
Sbjct: 336 EQIPAPVYYGNFPPRP 351


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 124 YVPSDGEWLPSPMDFSNA 71
           +VPSD  W P  + ++NA
Sbjct: 104 HVPSDHIWRPDIVLYNNA 121


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 124 YVPSDGEWLPSPMDFSNA 71
           +VPSD  W P  + ++NA
Sbjct: 104 HVPSDHIWRPDIVLYNNA 121


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 124 YVPSDGEWLPSPMDFSNA 71
           +VPSD  W P  + ++NA
Sbjct: 100 HVPSDHIWRPDIVLYNNA 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,688
Number of Sequences: 438
Number of extensions: 3835
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)