Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0288
         (622 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33060.2 68414.m04076 no apical meristem (NAM) family protein...    29   3.3  
At1g33060.1 68414.m04075 no apical meristem (NAM) family protein...    29   3.3  
At5g14770.1 68418.m01733 pentatricopeptide (PPR) repeat-containi...    28   5.7  
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ...    28   5.7  

>At1g33060.2 68414.m04076 no apical meristem (NAM) family protein
           similar to NAC1 GB:AAF68626 GI:7716952 from (Medicago
           truncatula)
          Length = 652

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 337 RTLWSHHDFRETDSYTRGSGQGQLGWTL 254
           RT W  H++R TD    G+G GQ  + L
Sbjct: 141 RTNWIMHEYRATDKELDGTGPGQNPYVL 168


>At1g33060.1 68414.m04075 no apical meristem (NAM) family protein
           similar to NAC1 GB:AAF68626 GI:7716952 from (Medicago
           truncatula)
          Length = 648

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 337 RTLWSHHDFRETDSYTRGSGQGQLGWTL 254
           RT W  H++R TD    G+G GQ  + L
Sbjct: 141 RTNWIMHEYRATDKELDGTGPGQNPYVL 168


>At5g14770.1 68418.m01733 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 938

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +3

Query: 21  NTYRLLCYHYFTVGRGLA---LLKSMGDGNHSPSDGTYARLLTRAIK 152
           +TY +L   +  VG+ L    LLK MG    SP+  TY  +++   K
Sbjct: 819 STYNVLISEFANVGKMLQARELLKEMGKRGVSPNTSTYCTMISGLCK 865


>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
           bromodomain-containing protein low similarity to
           SP|P51123 Transcription initiation factor TFIID 230 kDa
           subunit {Drosophila melanogaster}; contains Pfam
           profiles: PF00439 bromodomain, PF00240: Ubiquitin family
          Length = 1700

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +2

Query: 284 PSCVGIGFSEVMVAPKSSS 340
           PS  G+GFS V VAPKSS+
Sbjct: 902 PSGRGLGFSYVRVAPKSSA 920


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,262,309
Number of Sequences: 28952
Number of extensions: 273236
Number of successful extensions: 551
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)