Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0286
         (706 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5JZ45 Cluster: Putative uncharacterized protein; n=1; ...    35   1.7  
UniRef50_A2BVI2 Cluster: NAD binding site; n=5; Prochlorococcus ...    33   5.2  
UniRef50_Q8A3A5 Cluster: Sensor protein; n=3; Bacteroides|Rep: S...    33   6.8  

>UniRef50_A5JZ45 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 3377

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
 Frame = +2

Query: 464 NQVCIYLNKFSRTEKLVNTEELRLKKTYNIPKLTFKFGYFNYTYFKRDANFCSP-SGLCS 640
           N +CI L++ SRT   +N E+ + KK +    +  K  Y  Y++F R A FC      CS
Sbjct: 76  NNLCICLHQLSRTLSEINVEDTK-KKVFKY--ILKKLEYGKYSHFDR-ALFCKKFLSFCS 131

Query: 641 AH-NVTSDLYVTSKF 682
           A+ +++S+L     F
Sbjct: 132 AYEDISSELRNVKSF 146


>UniRef50_A2BVI2 Cluster: NAD binding site; n=5; Prochlorococcus
           marinus|Rep: NAD binding site - Prochlorococcus marinus
           (strain MIT 9515)
          Length = 377

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 479 YLNKFSRTEKLVNTEELRLKKTYNIPK--LTFKFGYFNYTY 595
           Y N   R  K  NT  LRLK   NIPK  + F+FG+  Y +
Sbjct: 157 YFNLGPRKPKFANTIALRLKGLGNIPKDSVRFEFGFIKYGF 197


>UniRef50_Q8A3A5 Cluster: Sensor protein; n=3; Bacteroides|Rep: Sensor
            protein - Bacteroides thetaiotaomicron
          Length = 1376

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +2

Query: 485  NKFSRTEKLVNTEELRLKKTYNIPKLTFKFGYFNYTYFKR 604
            N++ R  K+ N E L L+  YNI ++ +K G  +  YF++
Sbjct: 1311 NEYIRKVKMQNAERLLLEGKYNISEIAYKIGMNSTGYFRQ 1350


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 611,040,412
Number of Sequences: 1657284
Number of extensions: 11039574
Number of successful extensions: 22142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22128
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)