Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0286
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    28   1.1  
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc...    27   2.6  
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.0  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    25   8.0  

>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 244 AAHKHHCSF*IYNMFFPNVLRHFVKGIKEKLNNKKSF 354
           A+H    S  +  +FF  ++R FV GIK K  +K++F
Sbjct: 109 ASHVLDLSVNMTPIFFRYIVRQFVNGIKSKYLSKETF 145


>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 473 CIYLNKFSRTEKLVNTEELRLKKTYNIPKLTFKFGYFNYTYFKR 604
           C+++ + +R + L      RL     +P L F    F Y YF R
Sbjct: 232 CVFIRRSNREDILAGFRGPRLFSRQILPCLRFTPDIFEYVYFAR 275


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 156 TAHYFRCSDTISTYYRLNIDNVRFHSQC 73
           +A YF C DT  T+ +  +++VRF S+C
Sbjct: 21  SAQYF-CRDT--TFDKRTLESVRFESEC 45


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +1

Query: 16  SQLWRIKRVGY--FRLEHSATALRMEPYIVDI 105
           S+LWRI  VGY  F L    T +    Y++DI
Sbjct: 86  SKLWRIWNVGYSWFILSIIGTTVGFAAYMLDI 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,665,063
Number of Sequences: 5004
Number of extensions: 50863
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)