Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0286
         (706 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X51937-1|CAA36201.1|  984|Drosophila melanogaster protein ( Dros...    29   4.7  
X15469-1|CAA33496.1|  633|Drosophila melanogaster protein ( Dros...    29   4.7  

>X51937-1|CAA36201.1|  984|Drosophila melanogaster protein (
           Drosophila melanogasterNOF-FB transposable element. ).
          Length = 984

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 76  LRMEPYIVDIKSIISRYCIATPEVMCG 156
           LR+E Y  D  SI+  +C+  P+  CG
Sbjct: 100 LRIEGYCNDCSSILKGHCLVKPDEQCG 126


>X15469-1|CAA33496.1|  633|Drosophila melanogaster protein (
           Drosophila melanogasterDNA for complete foldback (FB)
           transposable n.  ).
          Length = 633

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 76  LRMEPYIVDIKSIISRYCIATPEVMCG 156
           LR+E Y  D  SI+  +C+  P+  CG
Sbjct: 172 LRIEGYCNDCSSILKGHCLVKPDEQCG 198


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,766,547
Number of Sequences: 53049
Number of extensions: 511873
Number of successful extensions: 950
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3108380451
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)