Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0286
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    24   1.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.1  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   6.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.5  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +2

Query: 440 ALTTFTYYNQVCIYLNKFSRTEKLVNTEELRLKKTYNIPKLTFKFGYFN 586
           A T FTY  Q+    NKF  T  L   E L L  + ++ +   K  + N
Sbjct: 11  ARTAFTY-EQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQN 58


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 192 YNYSHFSKHLPRTAHYFRCSDTISTYYRLNIDNVRF 85
           YN  HF +  P    + R    +S   RLN+  ++F
Sbjct: 540 YNIIHFKQIEPGKYEWVRVGKYLSGELRLNMSAIQF 575


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 195 GYNYSHFSKHLPRTAHYFRCSDTISTYYRLNI 100
           G  Y  ++   P      +C+ TI++Y+R+N+
Sbjct: 51  GEIYYIYNPRYPLPYSGSKCTWTITSYHRINL 82


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 456 VNVVSAIQEIISSGCVQMSLRTR 388
           VNV S ++     GC+Q++  TR
Sbjct: 922 VNVASRMESTGKVGCIQVTDETR 944


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,692
Number of Sequences: 438
Number of extensions: 3536
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)