Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0286
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69730.1 68414.m08024 protein kinase family protein contains ...    30   1.7  
At1g07725.1 68414.m00833 exocyst subunit EXO70 family protein co...    28   5.2  
At3g49670.1 68416.m05429 leucine-rich repeat transmembrane prote...    28   6.9  
At1g34570.1 68414.m04296 expressed protein                             27   9.2  

>At1g69730.1 68414.m08024 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain
          Length = 792

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 2   GKKYNHSYGESNESVISAWNIRLR 73
           G  + H + E +E++++ WNIRLR
Sbjct: 526 GNLFEHLHDEFDENIMATWNIRLR 549


>At1g07725.1 68414.m00833 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit;
          Length = 566

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 313 RNAVKHLEKTYYKFKKSN 260
           R A+KHLEK +Y+  KSN
Sbjct: 104 RKAMKHLEKEFYRVLKSN 121


>At3g49670.1 68416.m05429 leucine-rich repeat transmembrane protein
           kinase, putative CLAVATA1 receptor kinase, Arabidopsis
           thaliana, EMBL:ATU96879
          Length = 1002

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 563 TFKFGYFNYTYFKRDANFCSP 625
           T +F YFNYT F  +++ C P
Sbjct: 595 TGQFSYFNYTSFVGNSHLCGP 615


>At1g34570.1 68414.m04296 expressed protein
          Length = 208

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/21 (66%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +2

Query: 617 CSPSGLCSAHNVTSDL--YVT 673
           CS SG CS  NVT+DL  YVT
Sbjct: 170 CSVSGSCSGVNVTADLGSYVT 190


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,399,335
Number of Sequences: 28952
Number of extensions: 244896
Number of successful extensions: 452
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)