Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0285
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    29   0.89 
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    28   1.2  
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    27   2.1  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    27   3.6  
SPBC21B10.12 |rec6||meiotic recombination protein Rec6|Schizosac...    26   4.8  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    26   6.3  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   8.3  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   8.3  

>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 30/129 (23%), Positives = 54/129 (41%)
 Frame = +2

Query: 326 FTKISEEMKMSLQVLRPSGEFETIKVAGLSQSTTVDNLNDIVYLATDNGVYKYKDDGSIQ 505
           F K+SE +  +   L    E+  +    LS      N    V  A D G+ +Y  +    
Sbjct: 438 FQKLSETISSTSSFL---SEYYRLSSEALSIFKAYKNRYSFVNTACDTGLAQYLLEDYEN 494

Query: 506 LYAALREDVMYLAVSNDGGTMYIATWPQNRVHKLSNDGQKQEIFAPIPNGHGLTVDTRNN 685
            YA+L+   +  A SND      + +  + + KL    +  E  + I  G  +++  +N 
Sbjct: 495 AYASLKNVDVQTAWSNDPLEEKWSKFYVDLLEKLEKFDEALEFASAISKGK-VSIYNKNK 553

Query: 686 IYFVATKTS 712
           I  ++ KT+
Sbjct: 554 ILELSKKTA 562


>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 413 SQSTTVDNLNDIVYLATDNGVYK 481
           S  T +D LND  Y   +NGVYK
Sbjct: 163 SLRTKIDELNDYFYDTVNNGVYK 185


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 411 NPATLIVSNSPLGRNTCKLIFISSLIFVKNMLP 313
           NP TL  S    G + C++++ SSL+   N+ P
Sbjct: 31  NPFTLCFSKKANGASICEMLYESSLLAFVNISP 63


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 527 PLLKPRKAVSSRRLCIYTRHYQ 462
           P+ KP + V  RRL I   HYQ
Sbjct: 658 PITKPSEPVPMRRLTIVCNHYQ 679


>SPBC21B10.12 |rec6||meiotic recombination protein
           Rec6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 161 SPVMTRESLIKQINTQHFCANILKINNFYYSLAERKN 271
           S ++TRESL K     HF   + K     Y+   RKN
Sbjct: 55  SRILTRESLDKSFEQSHFQLLMYKKCKLIYTRTLRKN 91


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 668 LSNHARSVLARKFPV-FVRHLTVYE 597
           LSN    +L+RKFP  + +HL VY+
Sbjct: 330 LSNQLERILSRKFPEGWEKHLPVYK 354


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 608 SNDGQKQEIFAPIPNGHGLTVDTRNN 685
           + +G K E   P  NG G  VD  NN
Sbjct: 11  TTNGDKNEDGYPAENGEGTNVDDNNN 36


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 434 NLNDIVYLATDNGVYKYKDDGSIQLYAALREDV 532
           ++ND  + +T+NG+Y+    G   + AA   D+
Sbjct: 2   DINDPSFSSTENGIYELLSRGYAAIEAATERDL 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,939,469
Number of Sequences: 5004
Number of extensions: 60117
Number of successful extensions: 164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)