Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0285
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976...    31   0.93 
09_02_0063 - 3749675-3749734,3750264-3750309,3750851-3751422,375...    29   2.8  
02_02_0661 - 12731005-12731238,12732756-12732884,12732969-127331...    29   3.8  
02_02_0401 + 9847398-9847463,9848916-9849019,9849873-9849876,984...    29   5.0  
06_03_1411 - 29981153-29981407,29982072-29982308,29982975-299833...    28   6.6  
05_05_0189 + 23106165-23106341,23106606-23107598,23107694-23109013     28   8.7  
02_01_0135 + 967172-967229,968316-968657,968936-969015,969063-96...    28   8.7  

>06_03_0912 + 25896152-25896451,25896528-25897296,25897492-25897658,
            25898932-25901013,25901155-25901730,25904503-25905648,
            25907056-25908693
          Length = 2225

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 22/75 (29%), Positives = 31/75 (41%)
 Frame = +2

Query: 185  LIKQINTQHFCANILKINNFYYSLAERKNLSGIPADISIHWKTGNIFFTKISEEMKMSLQ 364
            L K  + Q     I  + N   SL E + L+     + + W   N        E K  LQ
Sbjct: 1321 LYKHYDGQSSSLVIKNLENLKGSLGEVQELAKYQ-QVRLVWSRSNFIEDSSMAEDKAVLQ 1379

Query: 365  VLRPSGEFETIKVAG 409
             LRP  + ETI++ G
Sbjct: 1380 KLRPHHDLETIEIEG 1394


>09_02_0063 -
           3749675-3749734,3750264-3750309,3750851-3751422,
           3751531-3751686
          Length = 277

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 145 VYNGFKPGYDEGEFDKANKH 204
           VYN FKPG+D G F    +H
Sbjct: 180 VYNKFKPGFDSGAFVPIGQH 199


>02_02_0661 -
           12731005-12731238,12732756-12732884,12732969-12733193,
           12733302-12733478,12733576-12733788
          Length = 325

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 422 TTVDNLNDIVYLATDNGVYK 481
           T+V+ +N++VY A +NGVYK
Sbjct: 174 TSVNEINELVYDAINNGVYK 193


>02_02_0401 +
           9847398-9847463,9848916-9849019,9849873-9849876,
           9849968-9851230
          Length = 478

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -2

Query: 671 QLSNHARSVLARKFPVFVRHLTVYER-DSVATSLCT*FRRHSKQPSTLRPLLKPRKAVSS 495
           +L+++  S L +K P    +L+V +  DS     C      +K  S LRP LK ++ VSS
Sbjct: 95  KLNSYLASGLLKKSPGLPENLSVSQSSDSNILQQCDVSSDENKLLSDLRPSLKSKEGVSS 154

Query: 494 R 492
           +
Sbjct: 155 K 155


>06_03_1411 -
           29981153-29981407,29982072-29982308,29982975-29983342,
           29983448-29983604,29983646-29983708
          Length = 359

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +2

Query: 335 ISEEMKMSLQVLRPSGEFETIKVAGLSQSTTVDNLNDIVYLATDNGVYKYKDDGSIQLYA 514
           +S E  +S+Q L+P  +F      GL +  T     DIV+ +  NG  +     ++Q  A
Sbjct: 231 LSSEPSISVQPLQPHDQFLIFASDGLWEHLTNQEAVDIVHSSPRNGSARRLIKAALQEAA 290

Query: 515 ALRE 526
             RE
Sbjct: 291 KKRE 294


>05_05_0189 + 23106165-23106341,23106606-23107598,23107694-23109013
          Length = 829

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = -1

Query: 492 SSLYLYTPLSVAK*TMSFKLSTVVD*LNPATLIVSNSPLGRNTCKLIFISSLIFVKNMLP 313
           SSLYL  PL  A     F  S  +  +      ++N  +G+NT  ++   S+      +P
Sbjct: 354 SSLYLEIPLRDAVSLSLFMNSKGIVEVITFNFFLTNKLIGKNTFSILICLSVAITAVSVP 413

Query: 312 VFQWM 298
           V  W+
Sbjct: 414 VAGWL 418


>02_01_0135 +
           967172-967229,968316-968657,968936-969015,969063-969698,
           969819-971527,971563-972514,972821-973273,974303-974497
          Length = 1474

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 174 VITGLESVIDVRHTKNINKVHPSILFLNNL 85
           V TGL ++I++RH     KVH +I  L NL
Sbjct: 685 VPTGLNNLINLRHLIAHEKVHSTIAGLGNL 714


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,897,794
Number of Sequences: 37544
Number of extensions: 350525
Number of successful extensions: 832
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)