Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0285
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.31 
SB_18803| Best HMM Match : KE2 (HMM E-Value=1.5)                       30   2.2  
SB_16934| Best HMM Match : Ldl_recept_b (HMM E-Value=1.7e-39)          30   2.2  
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0)                      29   2.9  
SB_17430| Best HMM Match : Kazal_1 (HMM E-Value=1e-07)                 29   3.8  
SB_15943| Best HMM Match : Pox_A32 (HMM E-Value=0.027)                 29   3.8  
SB_56951| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_51133| Best HMM Match : Pox_A32 (HMM E-Value=0.028)                 29   5.1  
SB_16972| Best HMM Match : Ribosomal_60s (HMM E-Value=0.51)            29   5.1  
SB_29928| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_21085| Best HMM Match : Nol1_Nop2_Fmu (HMM E-Value=2.1e-07)         28   6.7  
SB_13832| Best HMM Match : LRR_1 (HMM E-Value=5.4e-10)                 28   6.7  
SB_50530| Best HMM Match : Pencillinase_R (HMM E-Value=3.3)            28   8.9  
SB_21926| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_13131| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3669

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
 Frame = +2

Query: 143  TSITDSSPVMTRESL---IKQINTQHFCANILKINNFYYSLAERKNLSGIPADISIHWKT 313
            TS+T   P  T + L   I  +N     +N++ I     S ++  + S +  D  + WKT
Sbjct: 951  TSVT-LPPFYTTQGLPSKISSVNLTEALSNLISI-----SWSKPSDGSSLITDYEVQWKT 1004

Query: 314  GNIFFTKISEEMKMSLQVLRPSGEFE 391
            G I   K++ +   SL+V RP   +E
Sbjct: 1005 GEIVSQKLTSKTSASLEV-RPHTSYE 1029


>SB_18803| Best HMM Match : KE2 (HMM E-Value=1.5)
          Length = 244

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
 Frame = +2

Query: 143 TSITDSSPVMTRESLIKQINTQHFCANILKINNFYYSLAER-KNLSGIPADISIHWKTGN 319
           T  TD+S   TRE+LIK     HF + I ++++   SL +R K      +D+S+  +   
Sbjct: 134 TPPTDTSEEQTRENLIK----SHFTSRITELSSQCRSLYKRIKQADKNKSDLSMELQVAK 189

Query: 320 IFFTKISEEMKMSLQVLRPSGEFETIKVAGLSQSTTV--DNLNDIVYLATDNG 472
               +I +E++++ +         +  + G+++  T   D +  +   AT  G
Sbjct: 190 GRVKEIQDELEVTKRNYETQLSMMSEHLCGMNEKLTTQQDEIEALKGRATKKG 242


>SB_16934| Best HMM Match : Ldl_recept_b (HMM E-Value=1.7e-39)
          Length = 407

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +2

Query: 278 GIPADISIHWKTGNIFFTKISEEMKMSLQVLRPSGEFETIKVAGLSQSTTVDNLNDIVY 454
           GIP D+++ WK   +F+T       +S+  L  +G    I  +G  ++  VD L+D +Y
Sbjct: 136 GIPEDLALDWKGRRLFWTDPGLG-TISVIGLDGTGRRALIGTSGKPRAVLVDPLDDKLY 193


>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 154 GFKP-GYDEGEFDKANKHTTFLREYTQDQQFLLFAGGEKEF 273
           GF P G  EGEFD+ + H +  +  T D+ +   A  ++ F
Sbjct: 16  GFVPAGTGEGEFDQTSWHKSVDKRSTSDEAYFAVAAAQEAF 56


>SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0)
          Length = 1066

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = +2

Query: 449 VYLATDNGVYKYKDDGSIQL----YAALREDVMYLAVSNDGGTMYIATWPQNRVHKLSND 616
           VY    N   K    G +Q+    +A  R  ++Y+ V ND   +     P    H+L+ND
Sbjct: 239 VYDIAKNKYEKIVTSGGVQIQHVRWAPDRNALVYV-VENDMHYIDDVRLPLPEAHRLTND 297

Query: 617 GQKQEIFAPIPN 652
           G +  IF  +P+
Sbjct: 298 GDRLRIFNGVPD 309


>SB_17430| Best HMM Match : Kazal_1 (HMM E-Value=1e-07)
          Length = 396

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
 Frame = +2

Query: 254 LAERKNLSGIPADISIHWKTGNIFFTKISEEMKM----SLQVLRPSGEFETIKVAGLSQS 421
           L E +N  G+  DI+++W   +    +++ E+K     +  +  P+  F   +   LS  
Sbjct: 233 LREMQNFDGLHKDINVNWIAASSLPAEMNSELKTLFFPNTNLPLPADNFAYCQDVALSNY 292

Query: 422 TTVDNLNDIVYLATDNGVYKYKDDGSIQLYAALREDVMYLAVS 550
           T+V N+  IV     + V+K     +I  Y ++   V Y+ +S
Sbjct: 293 TSVPNV--IV-----SAVHKQSFGSTIPEYNSISVWVEYITIS 328


>SB_15943| Best HMM Match : Pox_A32 (HMM E-Value=0.027)
          Length = 804

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 106 GWMDFVNIFCMPYVYNGFKPGYDEGE 183
           G  D++ + C P+VYN    G+ EG+
Sbjct: 302 GKFDYIVLMCPPFVYNKTYDGFGEGD 327


>SB_56951| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 815

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 106 GWMDFVNIFCMPYVYNGFKPGYDEGE 183
           G  D++ I C  +VYN    G+DEG+
Sbjct: 448 GKFDYIVIVCPTFVYNKTYEGFDEGD 473


>SB_51133| Best HMM Match : Pox_A32 (HMM E-Value=0.028)
          Length = 1736

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 106  GWMDFVNIFCMPYVYNGFKPGYDEGE 183
            G  D++ + C  +VYN    G+DEG+
Sbjct: 1138 GKFDYIVLLCPTFVYNKTYDGFDEGD 1163


>SB_16972| Best HMM Match : Ribosomal_60s (HMM E-Value=0.51)
          Length = 1275

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 103 DGWMDFVNIFCMPYVYNGFKPGYDEGE 183
           DG  D++ + C  +VYN    G+ EG+
Sbjct: 712 DGQFDYIVLMCPTFVYNKTYDGFGEGD 738


>SB_29928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 231 LSIFAQKCC--VFICFIKLSLVITGLESVIDVRHT 133
           L IF   C   VF+C ++ S V+TG ES +  R+T
Sbjct: 159 LQIFITICKDRVFMCPVRTSAVVTGEESTLSSRNT 193


>SB_21085| Best HMM Match : Nol1_Nop2_Fmu (HMM E-Value=2.1e-07)
          Length = 219

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 14/169 (8%)
 Frame = +2

Query: 206 QHFCANILKINNFYYSL----AERKNLSGIPADISIHWKTGNIFFTKISEEMKMSLQVLR 373
           Q    NI  ++NF  +     + ++ LS +  D+  ++  G     K  E  +++  ++ 
Sbjct: 41  QRIRENIQALSNFSKAREPGRSRKEYLSLLLKDLCTYYSYGEFLMEKFLEMFQLNEALIN 100

Query: 374 ------PSGEFETIKVAGLSQSTTVDNLNDIVYLATDNGVYKYKDDGSIQLYAAL----R 523
                 P G++  + +     S  +    +  YLA   G Y  +   S+    AL    +
Sbjct: 101 RGVNLDPVGKWSKVGLVVYDSSVPIGATPE--YLA---GHYMIQGSSSMLPVMALAPQEK 155

Query: 524 EDVMYLAVSNDGGTMYIATWPQNRVHKLSNDGQKQEIFAPIPNGHGLTV 670
           E V+ +  +  G T Y+A   +N    ++ND +K+   A + N H L V
Sbjct: 156 ERVLDMCAAPGGKTTYLAALMKNTGIVVANDAKKERTKALVANIHRLGV 204


>SB_13832| Best HMM Match : LRR_1 (HMM E-Value=5.4e-10)
          Length = 637

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 709 CFRCNEIYIVSSVNCQTMPVRYWRENFLFL 620
           C+RCN+++    ++C T   ++W EN  FL
Sbjct: 544 CYRCNKVHDWEKIDCDT---KFW-ENMYFL 569


>SB_50530| Best HMM Match : Pencillinase_R (HMM E-Value=3.3)
          Length = 356

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +1

Query: 106 GWMDFVNIFCMPYVYNGFKPGYDEGEFDKANKHTTFLREYTQDQQFLLFAGGEK 267
           G  D++ + C  +VYN    G+ EG+    N+      E  Q  + L F  G K
Sbjct: 34  GKFDYIVLVCPTFVYNKTYDGFGEGD----NRLFVIAPEAGQIDKLLRFVSGSK 83


>SB_21926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 140 LTSITDSSPVMTRESLIKQINTQHFCANILKINNF 244
           L S T+SSP+++R+   KQ+  ++F       N F
Sbjct: 62  LMSCTESSPILSRQRRTKQVEKKYFSTASKSGNRF 96


>SB_13131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +2

Query: 254 LAERKNLSGIPADISIHWKTGNIFFTKISEEMKM----SLQVLRPSGEFETIKVAGLSQS 421
           L E +N  G+  DI+++W   +    +++ E+K     +  +  P+  F   +   LS  
Sbjct: 387 LREMQNFDGLHKDINVNWIAASSLPAEMNSELKTLFFPNTNLPLPADNFAYCQDVALSNY 446

Query: 422 TTVDNL 439
           T+V N+
Sbjct: 447 TSVPNV 452


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,428,588
Number of Sequences: 59808
Number of extensions: 438806
Number of successful extensions: 1259
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1256
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)