Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0285
(726 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X54315-1|CAA38213.1| 906|Homo sapiens protein ( Human mRNA for ... 38 0.048
S42303-1|AAB22854.1| 905|Homo sapiens N-cadherin protein. 38 0.048
M34064-1|AAA03236.1| 747|Homo sapiens NCAD protein. 38 0.048
BC036470-1|AAH36470.1| 906|Homo sapiens cadherin 2, type 1, N-c... 38 0.048
X57548-1|CAA40773.1| 748|Homo sapiens N-cadherin protein. 35 0.34
L34059-1|AAA35627.1| 916|Homo sapiens cadherin-4 protein. 33 0.79
X95701-1|CAA64997.1| 449|Homo sapiens GATA-6 DNA binding protei... 32 2.4
U66075-1|AAC50941.1| 449|Homo sapiens hGATA-6 protein. 32 2.4
D87811-1|BAA22621.1| 449|Homo sapiens GATA-6 protein. 32 2.4
BC112150-1|AAI12151.1| 916|Homo sapiens cadherin 4, type 1, pre... 32 2.4
BC101651-1|AAI01652.1| 916|Homo sapiens cadherin 4, type 1, R-c... 32 2.4
AL365401-1|CAC26840.2| 916|Homo sapiens cadherin 4, type 1, R-c... 32 2.4
AL365229-1|CAI16510.1| 916|Homo sapiens cadherin 4, type 1, R-c... 32 2.4
AL162457-1|CAH73749.1| 916|Homo sapiens cadherin 4, type 1, R-c... 32 2.4
AL109911-1|CAI19181.1| 916|Homo sapiens cadherin 4, type 1, R-c... 32 2.4
AK223547-1|BAD97267.1| 595|Homo sapiens GATA binding protein 6 ... 32 2.4
AK091496-1|BAC03677.1| 824|Homo sapiens protein ( Homo sapiens ... 32 2.4
>X54315-1|CAA38213.1| 906|Homo sapiens protein ( Human mRNA for
N-cadherin. ).
Length = 906
Score = 37.5 bits (83), Expect = 0.048
Identities = 19/65 (29%), Positives = 35/65 (53%)
Frame = +2
Query: 317 NIFFTKISEEMKMSLQVLRPSGEFETIKVAGLSQSTTVDNLNDIVYLATDNGVYKYKDDG 496
NI +TK+S+ L++ +G+ TI V +N+ + +LA+DNG+ G
Sbjct: 531 NIRYTKLSDPANW-LKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTG 589
Query: 497 SIQLY 511
++Q+Y
Sbjct: 590 TLQIY 594
>S42303-1|AAB22854.1| 905|Homo sapiens N-cadherin protein.
Length = 905
Score = 37.5 bits (83), Expect = 0.048
Identities = 19/65 (29%), Positives = 35/65 (53%)
Frame = +2
Query: 317 NIFFTKISEEMKMSLQVLRPSGEFETIKVAGLSQSTTVDNLNDIVYLATDNGVYKYKDDG 496
NI +TK+S+ L++ +G+ TI V +N+ + +LA+DNG+ G
Sbjct: 530 NIRYTKLSDPANW-LKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTG 588
Query: 497 SIQLY 511
++Q+Y
Sbjct: 589 TLQIY 593
>M34064-1|AAA03236.1| 747|Homo sapiens NCAD protein.
Length = 747
Score = 37.5 bits (83), Expect = 0.048
Identities = 19/65 (29%), Positives = 35/65 (53%)
Frame = +2
Query: 317 NIFFTKISEEMKMSLQVLRPSGEFETIKVAGLSQSTTVDNLNDIVYLATDNGVYKYKDDG 496
NI +TK+S+ L++ +G+ TI V +N+ + +LA+DNG+ G
Sbjct: 372 NIRYTKLSDPANW-LKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTG 430
Query: 497 SIQLY 511
++Q+Y
Sbjct: 431 TLQIY 435
>BC036470-1|AAH36470.1| 906|Homo sapiens cadherin 2, type 1,
N-cadherin (neuronal) protein.
Length = 906
Score = 37.5 bits (83), Expect = 0.048
Identities = 19/65 (29%), Positives = 35/65 (53%)
Frame = +2
Query: 317 NIFFTKISEEMKMSLQVLRPSGEFETIKVAGLSQSTTVDNLNDIVYLATDNGVYKYKDDG 496
NI +TK+S+ L++ +G+ TI V +N+ + +LA+DNG+ G
Sbjct: 531 NIRYTKLSDPANW-LKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTG 589
Query: 497 SIQLY 511
++Q+Y
Sbjct: 590 TLQIY 594
>X57548-1|CAA40773.1| 748|Homo sapiens N-cadherin protein.
Length = 748
Score = 34.7 bits (76), Expect = 0.34
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +2
Query: 326 FTKISEEMKMSLQVLRPSGEFETIKVAGLSQSTTVDNLNDIVYLATDNGVYKYKDDGSIQ 505
+TK+S+ L++ +G+ TI V +N+ + +LA+DNG+ G++Q
Sbjct: 376 YTKLSDPANW-LKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQ 434
Query: 506 LY 511
+Y
Sbjct: 435 IY 436
>L34059-1|AAA35627.1| 916|Homo sapiens cadherin-4 protein.
Length = 916
Score = 33.5 bits (73), Expect = 0.79
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +2
Query: 326 FTKISEEMKMSLQVLRPSGEFETIKVAGLSQSTTVDNLNDIVYLATDNGVYKYKDDGSIQ 505
++K+S+ L + +G+ T+ V T +N+ + +LA DNG+ G++Q
Sbjct: 544 YSKLSDPASW-LHINATNGQITTVAVLDRESLYTKNNVYEATFLAADNGIPPASGTGTLQ 602
Query: 506 LY 511
+Y
Sbjct: 603 IY 604
>X95701-1|CAA64997.1| 449|Homo sapiens GATA-6 DNA binding protein
protein.
Length = 449
Score = 31.9 bits (69), Expect = 2.4
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -2
Query: 605 VYERDSVATSLCT*FRRHSKQPSTLRPLLKPRKAV-SSRRL 486
++ RD LC +SK RPL+KP+K V SSRRL
Sbjct: 254 LWRRDGTGHYLCNACGLYSKMNGLSRPLIKPQKRVPSSRRL 294
>U66075-1|AAC50941.1| 449|Homo sapiens hGATA-6 protein.
Length = 449
Score = 31.9 bits (69), Expect = 2.4
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -2
Query: 605 VYERDSVATSLCT*FRRHSKQPSTLRPLLKPRKAV-SSRRL 486
++ RD LC +SK RPL+KP+K V SSRRL
Sbjct: 254 LWRRDGTGHYLCNACGLYSKMNGLSRPLIKPQKRVPSSRRL 294
>D87811-1|BAA22621.1| 449|Homo sapiens GATA-6 protein.
Length = 449
Score = 31.9 bits (69), Expect = 2.4
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -2
Query: 605 VYERDSVATSLCT*FRRHSKQPSTLRPLLKPRKAV-SSRRL 486
++ RD LC +SK RPL+KP+K V SSRRL
Sbjct: 254 LWRRDGTGHYLCNACGLYSKMNGLSRPLIKPQKRVPSSRRL 294
>BC112150-1|AAI12151.1| 916|Homo sapiens cadherin 4, type 1,
preproprotein protein.
Length = 916
Score = 31.9 bits (69), Expect = 2.4
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +2
Query: 326 FTKISEEMKMSLQVLRPSGEFETIKVAGLSQSTTVDNLNDIVYLATDNGVYKYKDDGSIQ 505
++K+S+ L + +G+ T V T +N+ + +LA DNG+ G++Q
Sbjct: 544 YSKLSDPASW-LHINATNGQITTAAVLDRESLYTKNNVYEATFLAADNGIPPASGTGTLQ 602
Query: 506 LY 511
+Y
Sbjct: 603 IY 604
>BC101651-1|AAI01652.1| 916|Homo sapiens cadherin 4, type 1,
R-cadherin (retinal) protein.
Length = 916
Score = 31.9 bits (69), Expect = 2.4
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +2
Query: 326 FTKISEEMKMSLQVLRPSGEFETIKVAGLSQSTTVDNLNDIVYLATDNGVYKYKDDGSIQ 505
++K+S+ L + +G+ T V T +N+ + +LA DNG+ G++Q
Sbjct: 544 YSKLSDPASW-LHINATNGQITTAAVLDRESLYTKNNVYEATFLAADNGIPPASGTGTLQ 602
Query: 506 LY 511
+Y
Sbjct: 603 IY 604
>AL365401-1|CAC26840.2| 916|Homo sapiens cadherin 4, type 1,
R-cadherin (retinal) protein.
Length = 916
Score = 31.9 bits (69), Expect = 2.4
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +2
Query: 326 FTKISEEMKMSLQVLRPSGEFETIKVAGLSQSTTVDNLNDIVYLATDNGVYKYKDDGSIQ 505
++K+S+ L + +G+ T V T +N+ + +LA DNG+ G++Q
Sbjct: 544 YSKLSDPASW-LHINATNGQITTAAVLDRESLYTKNNVYEATFLAADNGIPPASGTGTLQ 602
Query: 506 LY 511
+Y
Sbjct: 603 IY 604
>AL365229-1|CAI16510.1| 916|Homo sapiens cadherin 4, type 1,
R-cadherin (retinal) protein.
Length = 916
Score = 31.9 bits (69), Expect = 2.4
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +2
Query: 326 FTKISEEMKMSLQVLRPSGEFETIKVAGLSQSTTVDNLNDIVYLATDNGVYKYKDDGSIQ 505
++K+S+ L + +G+ T V T +N+ + +LA DNG+ G++Q
Sbjct: 544 YSKLSDPASW-LHINATNGQITTAAVLDRESLYTKNNVYEATFLAADNGIPPASGTGTLQ 602
Query: 506 LY 511
+Y
Sbjct: 603 IY 604
>AL162457-1|CAH73749.1| 916|Homo sapiens cadherin 4, type 1,
R-cadherin (retinal) protein.
Length = 916
Score = 31.9 bits (69), Expect = 2.4
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +2
Query: 326 FTKISEEMKMSLQVLRPSGEFETIKVAGLSQSTTVDNLNDIVYLATDNGVYKYKDDGSIQ 505
++K+S+ L + +G+ T V T +N+ + +LA DNG+ G++Q
Sbjct: 544 YSKLSDPASW-LHINATNGQITTAAVLDRESLYTKNNVYEATFLAADNGIPPASGTGTLQ 602
Query: 506 LY 511
+Y
Sbjct: 603 IY 604
>AL109911-1|CAI19181.1| 916|Homo sapiens cadherin 4, type 1,
R-cadherin (retinal) protein.
Length = 916
Score = 31.9 bits (69), Expect = 2.4
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +2
Query: 326 FTKISEEMKMSLQVLRPSGEFETIKVAGLSQSTTVDNLNDIVYLATDNGVYKYKDDGSIQ 505
++K+S+ L + +G+ T V T +N+ + +LA DNG+ G++Q
Sbjct: 544 YSKLSDPASW-LHINATNGQITTAAVLDRESLYTKNNVYEATFLAADNGIPPASGTGTLQ 602
Query: 506 LY 511
+Y
Sbjct: 603 IY 604
>AK223547-1|BAD97267.1| 595|Homo sapiens GATA binding protein 6
variant protein.
Length = 595
Score = 31.9 bits (69), Expect = 2.4
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -2
Query: 605 VYERDSVATSLCT*FRRHSKQPSTLRPLLKPRKAV-SSRRL 486
++ RD LC +SK RPL+KP+K V SSRRL
Sbjct: 400 LWRRDGTGHYLCNACGLYSKMNGLSRPLIKPQKRVPSSRRL 440
>AK091496-1|BAC03677.1| 824|Homo sapiens protein ( Homo sapiens
cDNA FLJ34177 fis, clone FCBBF3016451, highly similar to
RETINAL-CADHERIN PRECURSOR. ).
Length = 824
Score = 31.9 bits (69), Expect = 2.4
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +2
Query: 326 FTKISEEMKMSLQVLRPSGEFETIKVAGLSQSTTVDNLNDIVYLATDNGVYKYKDDGSIQ 505
++K+S+ L + +G+ T V T +N+ + +LA DNG+ G++Q
Sbjct: 452 YSKLSDPASW-LHINATNGQITTAAVLDRESLYTKNNVYEATFLAADNGIPPASGTGTLQ 510
Query: 506 LY 511
+Y
Sbjct: 511 IY 512
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,567,710
Number of Sequences: 237096
Number of extensions: 1926133
Number of successful extensions: 3626
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3626
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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