Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0285
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47808-2|CAA87770.1|  415|Caenorhabditis elegans Hypothetical pr...    32   0.36 
U62639-1|AAD09364.1|  925|Caenorhabditis elegans lr protein.           32   0.36 
U62281-1|AAD09363.1|  925|Caenorhabditis elegans lipoprotein rec...    32   0.36 
AF185706-1|AAD56241.1|  925|Caenorhabditis elegans yolk receptor...    32   0.36 
AF036703-1|AAB88554.3|  925|Caenorhabditis elegans Receptor medi...    32   0.36 
U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    28   7.8  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    28   7.8  
L23651-5|AAU87829.1| 1127|Caenorhabditis elegans Nuclear pore co...    28   7.8  

>Z47808-2|CAA87770.1|  415|Caenorhabditis elegans Hypothetical
           protein D2013.2 protein.
          Length = 415

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 428 VDNLNDIVYLATDNGVYKYKDDGSIQLYAALREDVMYLAV 547
           V  +ND++ L+ D GV+   DD S++LY     D  + ++
Sbjct: 31  VARINDVILLSKDEGVWTASDDRSVRLYLKRDNDQFWPSI 70


>U62639-1|AAD09364.1|  925|Caenorhabditis elegans lr protein.
          Length = 925

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +2

Query: 263 RKNLSGIPADISIHWKTGNIFFTKISEEMKMSLQVLRPSGEFETIKVAGLSQSTTVDNL 439
           R+N+ G+ +++++ W  GN+FFT+ S      + +   SG F    + G  Q  +   L
Sbjct: 463 RENVIGV-SNVAVDWIGGNVFFTQKSPSPSAGISICTMSGMFCRRVIEGKEQGQSYRGL 520


>U62281-1|AAD09363.1|  925|Caenorhabditis elegans lipoprotein
           receptor precursor protein.
          Length = 925

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +2

Query: 263 RKNLSGIPADISIHWKTGNIFFTKISEEMKMSLQVLRPSGEFETIKVAGLSQSTTVDNL 439
           R+N+ G+ +++++ W  GN+FFT+ S      + +   SG F    + G  Q  +   L
Sbjct: 463 RENVIGV-SNVAVDWIGGNVFFTQKSPSPSAGISICTMSGMFCRRVIEGKEQGQSYRGL 520


>AF185706-1|AAD56241.1|  925|Caenorhabditis elegans yolk receptor
           RME-2 protein.
          Length = 925

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +2

Query: 263 RKNLSGIPADISIHWKTGNIFFTKISEEMKMSLQVLRPSGEFETIKVAGLSQSTTVDNL 439
           R+N+ G+ +++++ W  GN+FFT+ S      + +   SG F    + G  Q  +   L
Sbjct: 463 RENVIGV-SNVAVDWIGGNVFFTQKSPSPSAGISICTMSGMFCRRVIEGKEQGQSYRGL 520


>AF036703-1|AAB88554.3|  925|Caenorhabditis elegans Receptor
           mediated endocytosis protein2 protein.
          Length = 925

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +2

Query: 263 RKNLSGIPADISIHWKTGNIFFTKISEEMKMSLQVLRPSGEFETIKVAGLSQSTTVDNL 439
           R+N+ G+ +++++ W  GN+FFT+ S      + +   SG F    + G  Q  +   L
Sbjct: 463 RENVIGV-SNVAVDWIGGNVFFTQKSPSPSAGISICTMSGMFCRRVIEGKEQGQSYRGL 520


>U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical
           protein R07E4.5 protein.
          Length = 817

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
 Frame = -2

Query: 644 LARKFPVFVRHLTV-YERDSV--ATSLCT*FRRHSKQPSTLRPLLKPRKAVSSRR---LC 483
           +AR+F + +R  +   ER +V  A      F + S+Q    +P  +PRKAVSSRR     
Sbjct: 711 MARQFAILIREESYGLERQAVPVADGAAQYFEQLSEQ-MLYQP--RPRKAVSSRRHHYTQ 767

Query: 482 IYTRHYQWPNKQCHLN 435
            +  H Q P+ Q HL+
Sbjct: 768 PHPHHQQMPHHQPHLH 783


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 281  IPADISIHWKTGNIFFTKISEEMKMSLQVLRPSGEFETI 397
            +P  I++ + TGN+F   +SE ++  L   R     E I
Sbjct: 4266 VPTAIAVDYTTGNLFIAAVSENIENGLVTARKKRMSEPI 4304


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 281  IPADISIHWKTGNIFFTKISEEMKMSLQVLRPSGEFETI 397
            +P  I++ + TGN+F   +SE ++  L   R     E I
Sbjct: 4266 VPTAIAVDYTTGNLFIAAVSENIENGLVTARKKRMSEPI 4304


>L23651-5|AAU87829.1| 1127|Caenorhabditis elegans Nuclear pore
           complex protein protein15 protein.
          Length = 1127

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 659 HARSVLARKFPVFVRHLTVYER 594
           HA+ VL  +  +F++H+ VYER
Sbjct: 539 HAKRVLTSRIMLFLKHMGVYER 560


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,132,102
Number of Sequences: 27780
Number of extensions: 335439
Number of successful extensions: 951
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)