Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0285
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            25   0.55 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.3  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   6.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.0  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 287 PGCRLNSFSPPANSKNC 237
           P C +N+++ P+N +NC
Sbjct: 154 PRCAVNNYNDPSNVRNC 170


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 109 WMDFVNIFCMPYVYNGFKPGY 171
           W+ ++N F  P +Y  F P +
Sbjct: 664 WLGYMNSFVNPVIYTVFNPEF 684


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 4/26 (15%)
 Frame = +2

Query: 428 VDNLNDIVYLATDNG----VYKYKDD 493
           +D +N IVY+A D G    VY+  D+
Sbjct: 197 MDPVNTIVYMADDKGDALIVYQNSDE 222


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 65  NCSQYTELNKERLAQCVESR 6
           NC+QY   + + + QC+  R
Sbjct: 611 NCTQYQIRDHKDVTQCISCR 630


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,441
Number of Sequences: 438
Number of extensions: 4572
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)