Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0285
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11080.1 68418.m01294 ubiquitin family protein contains INTER...    29   3.1  
At1g49245.1 68414.m05521 expressed protein                             29   3.1  
At5g41870.1 68418.m05098 glycoside hydrolase family 28 protein /...    28   7.2  
At5g17240.1 68418.m02020 SET domain-containing protein contains ...    28   7.2  
At1g34550.1 68414.m04294 expressed protein contains Pfam profile...    28   7.2  
At1g23880.1 68414.m03012 NHL repeat-containing protein contains ...    27   9.6  

>At5g11080.1 68418.m01294 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 352

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 158 SSPVMTRESLIKQINTQHFCANILKINNFYYSLAERK 268
           SSP +T +  +   +++H   NI+   N YYS A+++
Sbjct: 309 SSPRLTTDEELSDSDSEHEMVNIVSTLNLYYSKAKKE 345


>At1g49245.1 68414.m05521 expressed protein
          Length = 74

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 272 LSGIPADISIHWKTGNIFFTKISEEMKMSLQ 364
           LS + +  SI+ K GN+FF   +E+ K+S Q
Sbjct: 27  LSSLSSSRSIYQKNGNLFFLTSAEKAKISAQ 57


>At5g41870.1 68418.m05098 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to polygalacturonase PG1 [Glycine max]
           GI:5669846; contains PF00295: Glycosyl hydrolases family
           28
          Length = 449

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 690 YILFLVSTVKPCPFGIGAKISC 625
           ++LFL+STV P    +GA I+C
Sbjct: 11  FVLFLLSTVLPHHLSLGAPITC 32


>At5g17240.1 68418.m02020 SET domain-containing protein contains
           Pfam profile PF00856: SET domain
          Length = 491

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -1

Query: 396 IVSNSPLGRNTCKLIFISSLIFVKNMLPVFQWMLMSAGMPLK 271
           ++  S   ++  +L++  S I VKN + V +WM    G  L+
Sbjct: 341 LIPQSQRDKSVMRLVYAGSQISVKNEILVMKWMSEKCGSVLR 382


>At1g34550.1 68414.m04294 expressed protein contains Pfam profile
           PF04765: Protein of unknown function (DUF616);
           expression supported by MPSS
          Length = 812

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/85 (22%), Positives = 41/85 (48%)
 Frame = +2

Query: 173 TRESLIKQINTQHFCANILKINNFYYSLAERKNLSGIPADISIHWKTGNIFFTKISEEMK 352
           TRE   +  +  H  +  + +  FY +L  ++ +SG   + +  W +   + T++S  ++
Sbjct: 22  TREKFQRLHSYVHALSTEVAMKRFYGALTTKEGISGSGVNATSDWGS---YVTELSSLLE 78

Query: 353 MSLQVLRPSGEFETIKVAGLSQSTT 427
            S ++ R   + +  K+A   QS T
Sbjct: 79  KSPKIERVLIDDDNAKMAQFRQSGT 103


>At1g23880.1 68414.m03012 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 545

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +2

Query: 614 DGQKQEIFAPIPNGHGLTVDTRNNIYFVATKTSYILK 724
           DG+ ++  A + N  GLTVD R NIY   T  + I K
Sbjct: 196 DGRLRD--ARLNNPKGLTVDDRGNIYVADTVNNAIRK 230


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,832,670
Number of Sequences: 28952
Number of extensions: 296405
Number of successful extensions: 799
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)