Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0284
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    27   3.3  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    26   5.8  
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    25   7.6  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   7.6  

>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 605 IVSREDFCANLNTLRKNRGRYLHIPLFNYRIS 510
           ++SR D  ANL  +R  RG  LH  +  Y ++
Sbjct: 86  VLSRTDNNANLRIIRAPRGPSLHFRIHEYMLN 117


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 522 LSNKLNAKDCMRFENNVISKIFSE 451
           L+NKLN KD + FE+  +  + SE
Sbjct: 720 LNNKLNEKDNVVFEDKTLQHVASE 743


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 340 SIQNIYPRDTPYAFMTLNEISNCLNKNVIRNVI 242
           ++QN+   D+   F T +EI   + K+V  NV+
Sbjct: 88  AVQNLLQYDSTQTFQTGDEIDELIGKSVGSNVL 120


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 237 NKITFLITFLLRQFDISFKVINAYGVSLGYIFCI 338
           N+I  L    +  F+   KV NA+ V+ G+++CI
Sbjct: 16  NEIEALKAIFMDDFE-ELKVRNAWNVTNGHVYCI 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,663,469
Number of Sequences: 5004
Number of extensions: 55229
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)