Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0284
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40770| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.65 
SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)               29   3.5  
SB_28941| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.8026e-45)     29   3.5  
SB_23758| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_46719| Best HMM Match : zf-nanos (HMM E-Value=3.9)                  29   4.6  
SB_59806| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_51449| Best HMM Match : tRNA-synt_2c (HMM E-Value=1.4)              28   8.0  

>SB_40770| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 599 SREDFCANLNTLRKNRGRYLHIPL-FNYRISSMLKT 495
           SR +FC +LNTLR+   R  H+PL     +  ML+T
Sbjct: 92  SRGEFCTDLNTLRQRFTRNGHVPLGLKIVLREMLRT 127


>SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)
          Length = 1290

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 324  YIFCIDYHSVVKHLSLHTSELIFSDLNIKSPKKNTS 431
            Y++ ++Y+ + KH +  T E+IF D  +K    N S
Sbjct: 1180 YLYELEYNQIEKHYTDGTKEIIFPDQTVKYLHTNGS 1215


>SB_28941| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.8026e-45)
          Length = 2022

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 525  KEWNVEIPASVLSERI*VCAEVLTADNVWAHS*FSINWWY 644
            KEW + +   VL E I      L +  +W  S  ++ WW+
Sbjct: 1573 KEWPIAVMRQVLEELIAETPSDLLSRELWCSSTGALEWWH 1612


>SB_23758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/58 (25%), Positives = 33/58 (56%)
 Frame = +3

Query: 231 KYNKITFLITFLLRQFDISFKVINAYGVSLGYIFCIDYHSVVKHLSLHTSELIFSDLN 404
           K++K   +I F+   F+I F++ ++Y   L ++  ID  ++ +H+S      +F +L+
Sbjct: 88  KFSKERLVILFV---FEIQFEISHSYEEYLSFLREIDVRTLKEHISCAIKCFVFQNLD 142


>SB_46719| Best HMM Match : zf-nanos (HMM E-Value=3.9)
          Length = 166

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -1

Query: 644 IPPINAELRVSPHIVSREDFCANLNTLRKNRGRYLHI 534
           + P  AE      I   EDF    +T R N G+ LHI
Sbjct: 77  VKPSTAEYHFLKEIAELEDFGIEFHTARNNIGQQLHI 113


>SB_59806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 39  SVYSFNIYL*LSFHIVLKNSLSYKILYENIFTR*FKIEFFT 161
           S   F  Y+ LS+H  LK S   +I  EN+  R   I  FT
Sbjct: 27  STIQFRSYVYLSYHADLKISADPRICPENVADRRIHIPLFT 67


>SB_51449| Best HMM Match : tRNA-synt_2c (HMM E-Value=1.4)
          Length = 742

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 219 LSISKYNKITFLITFLLRQF 278
           +S +KYN +TFL  FLL QF
Sbjct: 74  ISTAKYNFLTFLPKFLLEQF 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,307,569
Number of Sequences: 59808
Number of extensions: 351002
Number of successful extensions: 604
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)