Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0284
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58726-1|AAB00575.2|  215|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z83239-4|CAB05808.1|  336|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U80030-4|AAG24162.2|  370|Caenorhabditis elegans Serpentine rece...    28   7.0  
AF100659-8|AAC68966.1|  688|Caenorhabditis elegans Hypothetical ...    27   9.3  

>U58726-1|AAB00575.2|  215|Caenorhabditis elegans Hypothetical
           protein T01C8.3 protein.
          Length = 215

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 283 ISNCLNKNVIRNVILLYFEILNSNCTIFLIAHRLCQTKI 167
           IS    +  I  V + +FEILN N  I L     C+ K+
Sbjct: 177 ISQFNREGAILKVTIFHFEILNKNNNICLTIRNFCKKKL 215


>Z83239-4|CAB05808.1|  336|Caenorhabditis elegans Hypothetical
           protein T09F5.8 protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
 Frame = +3

Query: 267 LRQFDISFKVINAYGVSLGYIFCIDYHSVVKHLSLHTSELIF---SDLNIKSPKKNTSCK 437
           +R FD +   I      +G    I Y  V+   ++    L+F   S  +I    KN    
Sbjct: 170 VRHFDTTEHEIYVVAYDMGIREYIGYRQVISLGTVTVEGLVFLILSHYHIYVSTKNMKVS 229

Query: 438 VIKGLQKIFLILHYFQIS 491
               +QKIFL   Y QI+
Sbjct: 230 TTMKMQKIFLKALYMQIA 247


>U80030-4|AAG24162.2|  370|Caenorhabditis elegans Serpentine
           receptor, class w protein120 protein.
          Length = 370

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +3

Query: 216 LLSISKYNKITFLITFLLRQFDISFKVIN-AYGVSLGYIFCIDYHSVVKHLSLHTSELIF 392
           + S+SK N  +   T L+    I+F ++   YG+SLG+++  DY S +  + L     IF
Sbjct: 257 ITSVSKNNN-SMSKTGLVFCVTITFFIVEFPYGLSLGFLWMFDYDSGISRI-LSYFGFIF 314

Query: 393 SDL 401
           S L
Sbjct: 315 SVL 317


>AF100659-8|AAC68966.1|  688|Caenorhabditis elegans Hypothetical
           protein F58E2.3 protein.
          Length = 688

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 23/94 (24%), Positives = 37/94 (39%)
 Frame = +3

Query: 216 LLSISKYNKITFLITFLLRQFDISFKVINAYGVSLGYIFCIDYHSVVKHLSLHTSELIFS 395
           +L +     I  LI F L    + F  +  Y  S G    ++YH    H S+ + E+   
Sbjct: 4   VLDLFPTKNIKNLIGFKLNH-KLDFVGLTLYFQSPGETVSLEYHQKGGHTSITSHEIYEK 62

Query: 396 DLNIKSPKKNTSCKVIKGLQKIFLILHYFQISYS 497
            L   S   +  CK +K   K  L++    +  S
Sbjct: 63  QLVRDSEFMSVVCKSLKVFLKSSLLIKKLDLEIS 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,353,269
Number of Sequences: 27780
Number of extensions: 296273
Number of successful extensions: 637
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)