Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0282
(730 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr... 24 1.4
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 23 3.3
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 23 3.3
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 23 3.3
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 23 3.3
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 23 3.3
AJ850297-1|CAH64517.1| 539|Tribolium castaneum putative esteras... 22 4.4
AJ850295-1|CAH64515.1| 539|Tribolium castaneum putative esteras... 22 4.4
EF592539-1|ABQ95985.1| 630|Tribolium castaneum beta-N-acetylglu... 22 5.8
EF468474-1|ABR25244.1| 516|Tribolium castaneum methoprene-toler... 22 5.8
AF442747-1|AAL40947.1| 669|Tribolium castaneum ABC transmembran... 21 7.7
AF422804-1|AAL56571.1| 669|Tribolium castaneum ABC transmembran... 21 7.7
>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
protein protein.
Length = 1156
Score = 23.8 bits (49), Expect = 1.4
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +2
Query: 503 EADVIGIHKPGKPKNHPTSYRPISLLMS 586
++DV+ + KPG P + P+ L +S
Sbjct: 220 DSDVVNLSKPGTPPSGEPGNGPLDLSVS 247
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 22.6 bits (46), Expect = 3.3
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +3
Query: 6 LYACLKD*AMHVSVQAVLRRYREWLNISVLVPXILLS 116
+YAC + + V+ +RR + +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 22.6 bits (46), Expect = 3.3
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +3
Query: 6 LYACLKD*AMHVSVQAVLRRYREWLNISVLVPXILLS 116
+YAC + + V+ +RR + +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 22.6 bits (46), Expect = 3.3
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +3
Query: 6 LYACLKD*AMHVSVQAVLRRYREWLNISVLVPXILLS 116
+YAC + + V+ +RR + +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 22.6 bits (46), Expect = 3.3
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +3
Query: 6 LYACLKD*AMHVSVQAVLRRYREWLNISVLVPXILLS 116
+YAC + + V+ +RR + +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 22.6 bits (46), Expect = 3.3
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +3
Query: 6 LYACLKD*AMHVSVQAVLRRYREWLNISVLVPXILLS 116
+YAC + + V+ +RR + +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226
>AJ850297-1|CAH64517.1| 539|Tribolium castaneum putative esterase
protein.
Length = 539
Score = 22.2 bits (45), Expect = 4.4
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +3
Query: 342 LPWLSRVTGNQGSIPVPTVYLTALL 416
+PW+ T ++G + +Y ALL
Sbjct: 313 VPWIVSFTNSEGLYAINEIYDNALL 337
>AJ850295-1|CAH64515.1| 539|Tribolium castaneum putative esterase
protein.
Length = 539
Score = 22.2 bits (45), Expect = 4.4
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +3
Query: 342 LPWLSRVTGNQGSIPVPTVYLTALL 416
+PW+ T ++G + +Y ALL
Sbjct: 313 VPWIVSFTNSEGLYAINEIYDNALL 337
>EF592539-1|ABQ95985.1| 630|Tribolium castaneum
beta-N-acetylglucosaminidase FDL protein.
Length = 630
Score = 21.8 bits (44), Expect = 5.8
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -2
Query: 309 RHLKDASPVLDHAICKSYPDSSKLTTSDARP 217
RH+K A PV+ + C S++L P
Sbjct: 68 RHIKGAIPVVSLSTCSMLCGSTQLWPQPTGP 98
>EF468474-1|ABR25244.1| 516|Tribolium castaneum methoprene-tolerant
protein.
Length = 516
Score = 21.8 bits (44), Expect = 5.8
Identities = 6/15 (40%), Positives = 12/15 (80%)
Frame = +2
Query: 491 AVWKEADVIGIHKPG 535
AV++ ++G+H+PG
Sbjct: 192 AVYEPVRIMGVHRPG 206
>AF442747-1|AAL40947.1| 669|Tribolium castaneum ABC transmembrane
transporter protein.
Length = 669
Score = 21.4 bits (43), Expect = 7.7
Identities = 6/13 (46%), Positives = 8/13 (61%)
Frame = +3
Query: 444 CWHLFSMPLWRTV 482
CW F LWR++
Sbjct: 393 CWAQFKAVLWRSI 405
>AF422804-1|AAL56571.1| 669|Tribolium castaneum ABC transmembrane
transporter white protein.
Length = 669
Score = 21.4 bits (43), Expect = 7.7
Identities = 6/13 (46%), Positives = 8/13 (61%)
Frame = +3
Query: 444 CWHLFSMPLWRTV 482
CW F LWR++
Sbjct: 393 CWAQFKAVLWRSI 405
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,798
Number of Sequences: 336
Number of extensions: 3352
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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