Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0282
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.4  
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.4  
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   8.4  

>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1073

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 429  TGRSL-ITRLDIPSEPGSNPDSPLPVTTMVVAETT 328
            TGR + +  LD+ S+   N D  LPV + +V+ +T
Sbjct: 896  TGRKIGVKMLDLDSKKFCNSDCELPVRSPIVSMST 930


>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 73  NGSIYQFWFLXSYSVTWITVVILELIHAIRTLTSD 177
           N  IY+ +F  ++S++ + + I  L   +RT++SD
Sbjct: 14  NTQIYRIFFTLTFSLSNLFLAICYLFLNVRTVSSD 48


>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +2

Query: 377 FDPGSDGISNRVIKLLPVQLIVMLASI 457
           F+ GS G+SNR+I    ++++++  S+
Sbjct: 188 FEGGSVGLSNRIITHRELEMVILSTSL 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,898,265
Number of Sequences: 5004
Number of extensions: 56364
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)