Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0282
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    58   6e-09
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    33   0.28 
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    33   0.28 
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    33   0.28 
Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z74472-2|CAA98945.1|  188|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 38/115 (33%), Positives = 55/115 (47%)
 Frame = +2

Query: 386 GSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYR 565
           G DGI+   I+ LP+     LA ++N +++  I P  WK+A+VI I KP K     +SYR
Sbjct: 347 GPDGIAQIHIRKLPMCGYSFLAYLYNVSLSTNIIPDKWKKANVIMIPKPKKDPAIASSYR 406

Query: 566 PISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHIL 730
           PISLL                + + S       Q GF+  HS    V ++T  I+
Sbjct: 407 PISLLSPIAKLLEKAILKRIKNSIESPA----HQHGFKPEHSTTTAVIQVTNDII 457


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 30/115 (26%), Positives = 45/115 (39%)
 Frame = +2

Query: 371 SGFDPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNH 550
           +G   G D IS   +K     +I ++   FN  + +   P  WK +    I K G  +N 
Sbjct: 390 NGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDREN- 448

Query: 551 PTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRTNHSCVQQVHRL 715
             +YRPI LL                  +     +  EQ GFR + S +  +H L
Sbjct: 449 LENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTIDHIHSL 501


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 30/115 (26%), Positives = 45/115 (39%)
 Frame = +2

Query: 371 SGFDPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNH 550
           +G   G D IS   +K     +I ++   FN  + +   P  WK +    I K G  +N 
Sbjct: 561 NGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDREN- 619

Query: 551 PTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRTNHSCVQQVHRL 715
             +YRPI LL                  +     +  EQ GFR + S +  +H L
Sbjct: 620 LENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTIDHIHSL 672


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 30/115 (26%), Positives = 45/115 (39%)
 Frame = +2

Query: 371 SGFDPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNH 550
           +G   G D IS   +K     +I ++   FN  + +   P  WK +    I K G  +N 
Sbjct: 300 NGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDREN- 358

Query: 551 PTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRTNHSCVQQVHRL 715
             +YRPI LL                  +     +  EQ GFR + S +  +H L
Sbjct: 359 LENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTIDHIHSL 411


>Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical
           protein F14B6.2 protein.
          Length = 720

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 399 IPSEPGSNPDSPLPVTTMVVAETT 328
           IP+ P   PD  LP+TTMV    T
Sbjct: 169 IPAVPPYEPDDDLPMTTMVTLTNT 192


>Z74472-2|CAA98945.1|  188|Caenorhabditis elegans Hypothetical
           protein F23H12.2 protein.
          Length = 188

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = -1

Query: 727 NVLREAVHLLNA*VICTESE--LFIDENALG*DEIFEALVEQ 608
           NV   AVH+ NA ++C ES+  L I +  L  D+ F A+V+Q
Sbjct: 99  NVDEGAVHIANAVMLCGESQQLLSIFQQTLSEDQ-FRAVVQQ 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,080,193
Number of Sequences: 27780
Number of extensions: 314870
Number of successful extensions: 901
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)