Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0282
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.7  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   2.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.0  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.0  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 228 PKSLILMNLDNFCRSHGQVPAT 293
           P+ L  +NL + CR HG  PAT
Sbjct: 430 PRELEAVNLGSACRIHGS-PAT 450



 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/38 (18%), Positives = 21/38 (55%)
 Frame = +3

Query: 9   YACLKD*AMHVSVQAVLRRYREWLNISVLVPXILLSYL 122
           Y C  +  + ++    +RR   +  +++++P + +S+L
Sbjct: 220 YTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFL 257


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 381 IPVPTVYLTALLNFYPSNSS 440
           + VP++YLT   N  P+N S
Sbjct: 40  VGVPSIYLTYAKNILPNNIS 59


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 9   YACLKD*AMHVSVQAVLRRYREWLNISVLVPXILLSYL 122
           Y C  +    +     LRR   +  ++++VP + +SYL
Sbjct: 215 YPCCDEPYPDIFFNITLRRKTLFYTVNLIVPCVSISYL 252


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/38 (18%), Positives = 21/38 (55%)
 Frame = +3

Query: 9   YACLKD*AMHVSVQAVLRRYREWLNISVLVPXILLSYL 122
           Y C  +  + ++    +RR   +  +++++P + +S+L
Sbjct: 224 YTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 261


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/38 (18%), Positives = 21/38 (55%)
 Frame = +3

Query: 9   YACLKD*AMHVSVQAVLRRYREWLNISVLVPXILLSYL 122
           Y C  +  + ++    +RR   +  +++++P + +S+L
Sbjct: 224 YTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 261


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/38 (21%), Positives = 20/38 (52%)
 Frame = +3

Query: 9   YACLKD*AMHVSVQAVLRRYREWLNISVLVPXILLSYL 122
           Y C ++    +     LRR   +  +++++P + +S+L
Sbjct: 216 YICCEEPYPDIVFNITLRRKTLFYTVNLIIPCVGISFL 253


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 414 ITRLDIPSEPGSNPDSPLP 358
           + R  I + P SNP SP+P
Sbjct: 429 VERDPILTPPSSNPVSPVP 447


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,937
Number of Sequences: 438
Number of extensions: 3822
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)