Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0282
         (730 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   1.4  
At4g38560.1 68417.m05459 expressed protein                             29   3.2  
At3g08510.1 68416.m00988 phosphoinositide-specific phospholipase...    28   7.3  

>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 252 DSSKLTTSDARPSVDWF*SNKSTHPITGQSSD 157
           DS     S  RPS+DWF  N+S +  +  SS+
Sbjct: 223 DSDLSFVSSDRPSMDWFEDNRSNYATSSSSSE 254


>At4g38560.1 68417.m05459 expressed protein
          Length = 521

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 1   GSYMLVSKIKPCMSQCKPY*GDTANGSIYQFWFLXSYSVTWITVVILEL 147
           GSY + + +   + +     GD A+GS  Q     SYS+  +  V+LEL
Sbjct: 340 GSYKVRASVSSTLQKILDKHGDIASGSKLQSLRTKSYSLETLAAVVLEL 388


>At3g08510.1 68416.m00988 phosphoinositide-specific phospholipase C
           (PLC2) identical to phosphoinositide specific
           phospholipase C(AtPLC2) GI:857374 [Arabidopsis thaliana]
          Length = 581

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = -2

Query: 366 PLPVTTMVVAETTIES**GRHLKDASPVLDHAICKSYPDSSKLTTSDARPSVDW 205
           P  V  + ++E  +E    ++ K       H + + YP  +++T+S+  P V W
Sbjct: 339 PDKVRRLSLSEEQLEKAAEKYAKQIVRFTQHNLLRIYPKGTRVTSSNYNPLVGW 392


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,197,504
Number of Sequences: 28952
Number of extensions: 296399
Number of successful extensions: 641
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)