Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0279
         (767 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   3.6  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   4.7  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   4.7  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 218 WRFNNEINHASKLSSLQLAIKF 153
           W FNN+I+  +    LQ A+ F
Sbjct: 420 WNFNNQISDDNPARFLQKAMDF 441


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 264 FCYCYINNSKYT 229
           FCYCY  NSK T
Sbjct: 272 FCYCYY-NSKMT 282


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 315 FVQFLLS*ACYKICKHYFCYCY 250
           F  FL   + + IC   F YCY
Sbjct: 234 FQNFLFVLSTFSICITQFYYCY 255


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,324
Number of Sequences: 336
Number of extensions: 3850
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)