Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0279
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    27   3.0  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    26   6.8  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   9.0  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   9.0  

>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -1

Query: 203 EINHAS--KLSSLQLAIKFKNGYRL*QLCFFIIELIPRN*F*FENGLCHFSSCT 48
           E+ H S  K   L L       Y L   C   I+LI R  F FENG+C F + T
Sbjct: 133 EMYHTSDDKFDKLGLDDSLNYPYVLGPTCDSDIDLI-REYFSFENGVCSFDNMT 185


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +3

Query: 543 IFHLKYQDIQKVCCKSVKGSGRGTFLIITPKYFWGK-LILPMAKNKKNVIAS 695
           ++H  Y  +   CC++V G       +  P    GK   +PMA  +  ++AS
Sbjct: 667 VYHYDYSRVLNACCENVIGYMPLPLGVAGPLIIDGKPFYIPMATTEGALVAS 718


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = -2

Query: 97  GTSFN-SKTVCAIFPVA--PKYVKPYDVMKVAE 8
           GT F+  K  C +  VA   KYV+PYD M++ +
Sbjct: 723 GTEFSFMKPACFLKNVAIGEKYVEPYDHMEIVD 755


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 507 ILKRYVIGSET*IFHLKYQDIQKVCCKSV 593
           +LKR  IG      HL  + +Q +CC S+
Sbjct: 263 LLKRISIGDSQLFLHLHSRIVQTLCCFSL 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,063,175
Number of Sequences: 5004
Number of extensions: 61478
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)