Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0279
         (767 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0115 - 6758540-6758771,6759417-6759524,6759670-6759840,675...    29   3.1  
05_05_0042 - 21798255-21798871,21799400-21799777,21799861-218008...    28   7.1  

>05_02_0115 -
           6758540-6758771,6759417-6759524,6759670-6759840,
           6759967-6760077,6760562-6760663,6761139-6761366,
           6761568-6761696,6761753-6761869,6761955-6762301,
           6762377-6762931,6763104-6763182,6763429-6763595,
           6763857-6764075,6764956-6765139,6765175-6765371,
           6765717-6766035,6766379-6766538,6767642-6767794,
           6767911-6768013
          Length = 1226

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +3

Query: 324 LHKLSLITTFSDLKA*CKNANKNGFVELSNF 416
           L++LSL+TTF D+ A  K++N   +  + NF
Sbjct: 710 LYQLSLLTTFYDILADEKSSNSKEYTNIVNF 740


>05_05_0042 -
           21798255-21798871,21799400-21799777,21799861-21800820,
           21800918-21800957,21801471-21801766,21802696-21802774,
           21803013-21803100,21803189-21803273,21803364-21803625,
           21803720-21805027,21806187-21806393,21807288-21807519,
           21808267-21808353,21808427-21808735,21808879-21808957,
           21809788-21809867,21809952-21810029,21810744-21810831,
           21811102-21811241,21811342-21811415,21812043-21812125,
           21812403-21812516,21813975-21814136,21814377-21814641
          Length = 2036

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 447 KNFTENEAEFTIS*I-ACVMNILKRYVIGSET*IFHLKYQDIQKVCCKSVKGSGRGTFLI 623
           +N  E  A+ TI  + A     +  +VI S   + +L   DI+KV   S +  G G  +I
Sbjct: 304 RNSLERRAQPTIEFVFAATEEAIFVHVIISARYMRNLCSDDIEKVLTHSPRSVGEGLPVI 363

Query: 624 ITPKYFWGKLI 656
           + P    G+L+
Sbjct: 364 VAPSGMLGRLV 374


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,304,107
Number of Sequences: 37544
Number of extensions: 307055
Number of successful extensions: 377
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)