Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0279
         (767 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              28   7.2  
SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)                  28   9.5  
SB_16523| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  

>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 288 CYKICKHYFCYCYINNSKYTC 226
           CY  C +Y+CYCY     Y C
Sbjct: 484 CYYYC-YYYCYCYCYYCCYYC 503


>SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)
          Length = 776

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = -3

Query: 84  IRKRFVPFFQLHQNT*NPTML 22
           IRKRF+  F+ HQN  NPTML
Sbjct: 236 IRKRFMAEFKEHQN--NPTML 254


>SB_16523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 83  FENGLCHFSSCTKIRETLRCYES 15
           F   L H+S+CT  RE ++C++S
Sbjct: 104 FSKLLKHYSACTVYRELIQCFKS 126


>SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +3

Query: 609 GTFLIITPKYFWGKLILPMAKNKKNV-IASF*YLSWYS 719
           G FL+ITP++FW    L +     N  I       WYS
Sbjct: 27  GLFLLITPRFFWSTYFLFLFGKASNASIMCLAIDRWYS 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,086,466
Number of Sequences: 59808
Number of extensions: 397265
Number of successful extensions: 679
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)