Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0278
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   3.4  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   5.9  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   5.9  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   7.8  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   7.8  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 317 FTMFLTLFGERLQGTDPEDVIKNA 388
           FT+ +T+ GE  +GT P   +  A
Sbjct: 182 FTISVTIDGETFEGTGPSKKLAKA 205


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 170 FKEAFNMIDQNRDGF 214
           F++A  M+D+N +GF
Sbjct: 220 FQKALRMVDENINGF 234


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 75  DDMVKNTNCLLP 40
           +D++KNT C+ P
Sbjct: 405 NDLIKNTRCISP 416


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
          protein-1 protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
 Frame = +3

Query: 12 KCSFFSTSRQAASSW---CSSPCH 74
          KCS + + RQ  +S+   C   CH
Sbjct: 21 KCSGYPSIRQGTTSYCLGCGDSCH 44


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 496 AQGSTNPRWTLR 531
           A+G  NPRW  R
Sbjct: 311 ARGKKNPRWEFR 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,865
Number of Sequences: 438
Number of extensions: 3563
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)