Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0277
(667 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM295014-1|CAL25729.1| 407|Tribolium castaneum ultraspiracle nu... 23 3.0
AF243042-1|AAF68438.1| 126|Tribolium castaneum mutant transcrip... 22 3.9
U81040-1|AAB39356.1| 283|Tribolium castaneum TC Deformed protein. 21 6.9
U81038-1|AAB39355.1| 412|Tribolium castaneum transcription fact... 21 6.9
EF592539-1|ABQ95985.1| 630|Tribolium castaneum beta-N-acetylglu... 21 6.9
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr... 21 6.9
AF321227-3|AAK16423.1| 412|Tribolium castaneum Dfd protein. 21 6.9
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 21 9.1
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 21 9.1
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 21 9.1
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 21 9.1
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 21 9.1
AM292363-1|CAL23175.2| 347|Tribolium castaneum gustatory recept... 21 9.1
AM292340-1|CAL23152.1| 355|Tribolium castaneum gustatory recept... 21 9.1
AF442747-1|AAL40947.1| 669|Tribolium castaneum ABC transmembran... 21 9.1
AF422804-1|AAL56571.1| 669|Tribolium castaneum ABC transmembran... 21 9.1
>AM295014-1|CAL25729.1| 407|Tribolium castaneum ultraspiracle
nuclear receptor protein.
Length = 407
Score = 22.6 bits (46), Expect = 3.0
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = +2
Query: 236 SLSGPNSLSQSAPQSN---KSSVAKPNYTLKFTLAGHTKAVSSVKFSPN 373
SL P S P ++ + S PN + F++ GH +S +PN
Sbjct: 18 SLGAPQSPLDMKPDASTLGQFSPQGPNSPVSFSMGGHGSLLSPSGNTPN 66
>AF243042-1|AAF68438.1| 126|Tribolium castaneum mutant
transcription factor TcDfd1 protein.
Length = 126
Score = 22.2 bits (45), Expect = 3.9
Identities = 10/29 (34%), Positives = 11/29 (37%)
Frame = +2
Query: 197 HPAAHQTHGGPSASLSGPNSLSQSAPQSN 283
HP H HG P P L + P N
Sbjct: 86 HPQLHSHHGPPIHHQIRPPILHDTQPMCN 114
>U81040-1|AAB39356.1| 283|Tribolium castaneum TC Deformed protein.
Length = 283
Score = 21.4 bits (43), Expect = 6.9
Identities = 10/36 (27%), Positives = 12/36 (33%)
Frame = +2
Query: 197 HPAAHQTHGGPSASLSGPNSLSQSAPQSNKSSVAKP 304
HP H HG P P L + P + P
Sbjct: 86 HPQLHSHHGPPIHHQIRPPILHDTQPMCESLNTQPP 121
>U81038-1|AAB39355.1| 412|Tribolium castaneum transcription factor
Deformed protein.
Length = 412
Score = 21.4 bits (43), Expect = 6.9
Identities = 10/36 (27%), Positives = 12/36 (33%)
Frame = +2
Query: 197 HPAAHQTHGGPSASLSGPNSLSQSAPQSNKSSVAKP 304
HP H HG P P L + P + P
Sbjct: 86 HPQLHSHHGPPIHHQIRPPILHDTQPMCESLNTQPP 121
>EF592539-1|ABQ95985.1| 630|Tribolium castaneum
beta-N-acetylglucosaminidase FDL protein.
Length = 630
Score = 21.4 bits (43), Expect = 6.9
Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Frame = -3
Query: 176 APCFNYRRTTLYVFVTPHNHYYTQNXKVNESFDKLKSFVLR---AVSFFHL 33
A C N R +LY P N V E +KL +L FHL
Sbjct: 349 AVCVNERPWSLYCGEPPCGQLNPDNPNVYEILEKLYKDLLELSDETELFHL 399
>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
protein protein.
Length = 1156
Score = 21.4 bits (43), Expect = 6.9
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = +3
Query: 255 HYHNLLHSQTSLQWRS 302
HY N++ + + WRS
Sbjct: 503 HYTNIISQEQIISWRS 518
>AF321227-3|AAK16423.1| 412|Tribolium castaneum Dfd protein.
Length = 412
Score = 21.4 bits (43), Expect = 6.9
Identities = 10/36 (27%), Positives = 12/36 (33%)
Frame = +2
Query: 197 HPAAHQTHGGPSASLSGPNSLSQSAPQSNKSSVAKP 304
HP H HG P P L + P + P
Sbjct: 86 HPQLHSHHGPPIHHQIRPPILHDTQPMCESLNTQPP 121
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 21.0 bits (42), Expect = 9.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 540 FKVLSSLALTINLLSEDHATS 478
F V SS+ LT+ +L+ H T+
Sbjct: 283 FMVASSVVLTVVVLNYHHRTA 303
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 21.0 bits (42), Expect = 9.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 540 FKVLSSLALTINLLSEDHATS 478
F V SS+ LT+ +L+ H T+
Sbjct: 283 FMVASSVVLTVVVLNYHHRTA 303
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 21.0 bits (42), Expect = 9.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 540 FKVLSSLALTINLLSEDHATS 478
F V SS+ LT+ +L+ H T+
Sbjct: 283 FMVASSVVLTVVVLNYHHRTA 303
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 21.0 bits (42), Expect = 9.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 540 FKVLSSLALTINLLSEDHATS 478
F V SS+ LT+ +L+ H T+
Sbjct: 283 FMVASSVVLTVVVLNYHHRTA 303
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 21.0 bits (42), Expect = 9.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 540 FKVLSSLALTINLLSEDHATS 478
F V SS+ LT+ +L+ H T+
Sbjct: 283 FMVASSVVLTVVVLNYHHRTA 303
>AM292363-1|CAL23175.2| 347|Tribolium castaneum gustatory receptor
candidate 42 protein.
Length = 347
Score = 21.0 bits (42), Expect = 9.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +3
Query: 87 FIYFXILCVIVIVWGDEY 140
F Y LCVIV ++ +Y
Sbjct: 156 FYYTYFLCVIVCIFRGKY 173
>AM292340-1|CAL23152.1| 355|Tribolium castaneum gustatory receptor
candidate 19 protein.
Length = 355
Score = 21.0 bits (42), Expect = 9.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 467 MGISDVAWSSDSRLIV 514
MGI+ + W+S RL V
Sbjct: 338 MGITPMIWNSTRRLFV 353
>AF442747-1|AAL40947.1| 669|Tribolium castaneum ABC transmembrane
transporter protein.
Length = 669
Score = 21.0 bits (42), Expect = 9.1
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +3
Query: 63 KTF*FVETFIYFXILCVIVIVWGDEYI*RSASIVETW 173
+TF F E ++ + V++ G + A +V+TW
Sbjct: 630 ETFHFSEADFVMDVVMLAVLIVGFRLVAFLALLVKTW 666
>AF422804-1|AAL56571.1| 669|Tribolium castaneum ABC transmembrane
transporter white protein.
Length = 669
Score = 21.0 bits (42), Expect = 9.1
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +3
Query: 63 KTF*FVETFIYFXILCVIVIVWGDEYI*RSASIVETW 173
+TF F E ++ + V++ G + A +V+TW
Sbjct: 630 ETFHFSEADFVMDVVMLAVLIVGFRLVAFLALLVKTW 666
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,155
Number of Sequences: 336
Number of extensions: 3468
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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