Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0277
         (667 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           39   1e-04
AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform ...    30   0.057
AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform ...    30   0.057
AJ441131-4|CAD29633.1|  566|Anopheles gambiae putative apyrase/n...    25   1.6  
AF080565-1|AAC31945.1|  324|Anopheles gambiae Antennapedia homeo...    25   1.6  
AJ439398-3|CAD28126.1|  566|Anopheles gambiae putative 5' nucleo...    25   2.1  
AF395079-1|AAK97461.1|  371|Anopheles gambiae basic helix-loop-h...    24   3.7  

>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 39.1 bits (87), Expect = 1e-04
 Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
 Frame = +2

Query: 284 KSSVAKPNYTLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISG 460
           K +V  P  T  + L GH   V  VK++   + LAS  +  +I +W  Y+G++  + I+ 
Sbjct: 47  KKNVDYPLRT-NYNLRGHRSDVILVKWNEPYQKLASCDSSGIIFVWIKYEGRWSVELIND 105

Query: 461 HKMGISDVAWSSDSRLIVSASDDKTLKVWELSSGKCLKTLKGHSNYVFCCNFNPQSNLI 637
               ++  +WS D R+ +    D  + V  ++  +   ++      + C  + P    +
Sbjct: 106 RNTPVTHFSWSHDGRMALICYQDGFVLVGSVAGQRYWSSMLNLDATITCGIWTPDDQQV 164


>AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform B
           protein.
          Length = 755

 Score = 30.3 bits (65), Expect = 0.057
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +2

Query: 179 LGPVPGHPAAHQTHGGPSASLSGPNSLSQSAPQSNKSSVAKPNYTLKFT-LAGHTKAVSS 355
           L PV G PAA      P +S   P   S +A  S   S+A PN    F  L   T A + 
Sbjct: 79  LKPVAGAPAAPGPSALPLSSRKSPTVSSAAALNSGFPSIANPNPRSPFRHLDFSTSATAE 138

Query: 356 VKFSPN 373
           ++ +P+
Sbjct: 139 LRRNPS 144


>AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform A
           protein.
          Length = 753

 Score = 30.3 bits (65), Expect = 0.057
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +2

Query: 179 LGPVPGHPAAHQTHGGPSASLSGPNSLSQSAPQSNKSSVAKPNYTLKFT-LAGHTKAVSS 355
           L PV G PAA      P +S   P   S +A  S   S+A PN    F  L   T A + 
Sbjct: 79  LKPVAGAPAAPGPSALPLSSRKSPTVSSAAALNSGFPSIANPNPRSPFRHLDFSTSATAE 138

Query: 356 VKFSPN 373
           ++ +P+
Sbjct: 139 LRRNPS 144


>AJ441131-4|CAD29633.1|  566|Anopheles gambiae putative
           apyrase/nucleotidase protein.
          Length = 566

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 255 HYHNLLHSQTSLQWRSRTIPSNSLSLVIQRLCHR 356
           H H LLH+ T   W    +P+ S   V+++   R
Sbjct: 264 HSHTLLHTGTVADWPD--VPAGSFPFVVEQAAGR 295


>AF080565-1|AAC31945.1|  324|Anopheles gambiae Antennapedia homeotic
           protein protein.
          Length = 324

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +2

Query: 191 PGHPAAHQTHGG--PSASLSGPNSLSQSAPQSNKSSVAKPN 307
           P H A +   GG  P  +   PN + Q  P  ++   A PN
Sbjct: 182 PQHMAMYTNAGGGPPGVTQQQPNMMHQQPPPLHQGQQAPPN 222


>AJ439398-3|CAD28126.1|  566|Anopheles gambiae putative 5'
           nucleotidase protein.
          Length = 566

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 255 HYHNLLHSQTSLQWRSRTIPSNSLSLVIQRLCHR 356
           H H LLH+ T   W    +P+ S   V+++   R
Sbjct: 264 HSHTLLHTGTVADWPD--VPAGSYPFVVEQAAGR 295


>AF395079-1|AAK97461.1|  371|Anopheles gambiae basic
           helix-loop-helix transcriptionfactor ASH protein.
          Length = 371

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 185 PVPGHPAAHQTHGGPS 232
           P P H + H +HGG S
Sbjct: 220 PAPSHLSDHSSHGGTS 235


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 711,380
Number of Sequences: 2352
Number of extensions: 15486
Number of successful extensions: 38
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66486645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)