Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0277
         (667 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.0  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   8.0  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   8.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.0  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 304 ELYPQIHSRWSYKGCVIGKIQ 366
           +LY Q    W Y   VI ++Q
Sbjct: 462 DLYIQTREDWKYVAMVIDRLQ 482


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 23/97 (23%), Positives = 38/97 (39%)
 Frame = +2

Query: 203 AAHQTHGGPSASLSGPNSLSQSAPQSNKSSVAKPNYTLKFTLAGHTKAVSSVKFSPNGEW 382
           AA  T   PS    G +S S S+P S  SSV+  +   +     +T       F    ++
Sbjct: 73  AAAITSTSPSYPGGGSSSPSPSSPSSFFSSVSPTSLGSE----NYTGISDLFVFDDLNDY 128

Query: 383 LASSSADKLIKIWGAYDGKFEKTISGHKMGISDVAWS 493
           +   +    + +   YDG     ++G     S +A S
Sbjct: 129 INRLNYSAFVNLTAYYDGGANLNLNGTVNCTSSIASS 165


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 12/42 (28%), Positives = 14/42 (33%)
 Frame = +2

Query: 212 QTHGGPSASLSGPNSLSQSAPQSNKSSVAKPNYTLKFTLAGH 337
           Q H  PS + S P     SA  S  +      Y      A H
Sbjct: 57  QQHNSPSPTGSSPQHSGSSASTSPAARTTSSMYPYVSAAAAH 98


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 6   NVLLKSTLN*MKKRDCAKY 62
           ++L K+TLN + + +C KY
Sbjct: 308 HILQKTTLNMLTQVECYKY 326


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 306  FGFATEDLFD 277
            FGF+TED+ D
Sbjct: 1416 FGFSTEDILD 1425


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,767
Number of Sequences: 438
Number of extensions: 4033
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)