Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0276
(696 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 57 3e-09
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 54 3e-08
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 51 2e-07
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 48 2e-06
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 46 5e-06
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 42 8e-05
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 33 0.030
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 32 0.090
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 29 0.64
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 27 3.4
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 56.8 bits (131), Expect = 3e-09
Identities = 29/73 (39%), Positives = 38/73 (52%)
Frame = +3
Query: 3 EEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAK 182
+ P Y +VK PMDL TI + + + EF D+ LM SN +YN TE V SM K
Sbjct: 118 QNIPDYPTIVKNPMDLGTIEKKLTSYEYSVPQEFIDDMNLMFSNCFLYNGTESPVGSMGK 177
Query: 183 EMHEEAQCQLGML 221
+ E + QL L
Sbjct: 178 ALQEVFERQLKQL 190
Score = 54.4 bits (125), Expect = 1e-08
Identities = 23/61 (37%), Positives = 35/61 (57%)
Frame = +3
Query: 6 EAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKE 185
+ P Y V+K PMDL+TI+ ++ T EF+ D+LLM +N YN VH M ++
Sbjct: 289 DCPDYFDVIKEPMDLSTIQSKLNKNEYSTLEEFESDILLMFNNCFTYNPPGTPVHVMGRQ 348
Query: 186 M 188
+
Sbjct: 349 L 349
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 53.6 bits (123), Expect = 3e-08
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Frame = +3
Query: 6 EAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNS-TEHSVHSMAK 182
+AP Y V+K PMDL TI RN+ N + + EF D++L+ SN +YNS +H + A+
Sbjct: 332 DAPDYYTVIKEPMDLGTILRNLKNLHYNSKKEFVHDLMLIWSNCFLYNSHPDHPLRVHAQ 391
Query: 183 EMHEEA 200
M +++
Sbjct: 392 FMKDKS 397
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 50.8 bits (116), Expect = 2e-07
Identities = 24/73 (32%), Positives = 37/73 (50%)
Frame = +3
Query: 3 EEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAK 182
+ P Y ++K P+DL T+++ +G + F D+ LM SN +YN TE V M K
Sbjct: 263 QNIPDYPTIIKNPIDLGTMQKKFSSGVYSSAQHFIDDMNLMFSNCFLYNGTESPVGVMGK 322
Query: 183 EMHEEAQCQLGML 221
+ + QL L
Sbjct: 323 NLQATFERQLKQL 335
Score = 46.4 bits (105), Expect = 4e-06
Identities = 20/59 (33%), Positives = 33/59 (55%)
Frame = +3
Query: 12 PGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEM 188
P Y V+K PMDL T++ +++ + F+ D++LM N +NS VH M K++
Sbjct: 428 PDYFKVIKHPMDLGTMQNKLNHNEYASMKAFEADMVLMFKNCYKFNSAGTPVHLMGKKL 486
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 47.6 bits (108), Expect = 2e-06
Identities = 23/61 (37%), Positives = 32/61 (52%)
Frame = +3
Query: 12 PGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEMH 191
P Y +++KRP+ L I+RNI N E D +LM +NA YN V+ AK M
Sbjct: 1554 PDYYIIIKRPIALGKIKRNIKNDRYGDVGELIADFMLMFNNAYTYNEEHSIVYEDAKLME 1613
Query: 192 E 194
+
Sbjct: 1614 K 1614
>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 46.0 bits (104), Expect = 5e-06
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +3
Query: 3 EEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTE 158
+EAP Y +V +P DL T++ I GNI E R+VL + +N +YN ++
Sbjct: 217 KEAPDYDSLVYKPQDLRTLKNMIKEGNITEVDELYREVLRIFANCKMYNGSD 268
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 41.9 bits (94), Expect = 8e-05
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +3
Query: 3 EEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAK 182
E+ P Y V++ PMDL+T+ + N + EF RD + N YN + + + A
Sbjct: 375 EDVPDYYEVIEHPMDLSTMEFRLRNNQYESVEEFIRDAKYIFDNCRSYNDSNTTYYKNAD 434
Query: 183 EMHEEAQCQL 212
+ + Q +L
Sbjct: 435 RLEKFFQKKL 444
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 33.5 bits (73), Expect = 0.030
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 12 PGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYN 149
P Y ++++P+ +R G + +F D+ LM+SNA YN
Sbjct: 47 PDYYQIIQKPICYKMMRNKAKTGKYLSMGDFYDDIRLMVSNAQTYN 92
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 31.9 bits (69), Expect = 0.090
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +3
Query: 12 PGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVH 170
P Y +++PM L I++ + T +F D LM NA +N V+
Sbjct: 247 PEYYQAIEQPMALEVIQKKLSKHRYETIEQFVDDFNLMFDNAKSFNDPSSQVY 299
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 29.1 bits (62), Expect = 0.64
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +3
Query: 42 MDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEMHEEAQCQLGML 221
M+ I R + +G T EF RD+ ++ +A++ S + ++ AKEM A+ + L
Sbjct: 969 MNFEEIERRLWSGRYCTPKEFLRDIKMIKQDAIL--SGDVNLKHKAKEMFAHAELNVDEL 1026
Query: 222 V 224
+
Sbjct: 1027 I 1027
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Frame = +2
Query: 50 HHDPQEHRQRKHQDDGRVPARRAPDAVQCP--HLQQH 154
HH H H DD PA + + V P +Q H
Sbjct: 301 HHHHHHHHHHSHDDDPSSPAEKKQNHVPSPSEKIQDH 337
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,332,514
Number of Sequences: 5004
Number of extensions: 39146
Number of successful extensions: 116
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -