Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0276
(696 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0513 - 23569212-23569675,23569759-23569801,23569888-235700... 60 2e-09
03_01_0219 + 1731267-1731728,1732148-1732235,1732330-1732417,173... 54 8e-08
04_04_1201 - 31697707-31697765,31697863-31698013,31698100-31699260 52 3e-07
04_04_1198 - 31679584-31679642,31679740-31679854,31680701-316807... 52 4e-07
02_02_0277 + 8489717-8491468,8491571-8491610,8491719-8491841,849... 52 6e-07
08_01_0619 + 5412058-5413224,5413357-5413476,5413755-5413831,541... 50 2e-06
07_03_0538 + 19231318-19231382,19231652-19232390,19232468-192325... 49 3e-06
08_01_0186 - 1561695-1561958,1562041-1562183,1562260-1562326,156... 48 9e-06
01_01_0802 + 6246267-6247541,6247625-6247682,6247806-6248129,624... 48 9e-06
06_01_0273 + 2022479-2022592,2022830-2022973,2023524-2023601,202... 47 1e-05
06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785... 44 9e-05
01_06_0069 - 26169818-26169904,26170186-26170893 42 5e-04
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362... 32 0.002
10_08_0006 - 14035990-14036135,14036246-14036339,14036845-140371... 37 0.013
09_06_0192 - 21450158-21450276,21451084-21451573,21451750-214518... 35 0.054
03_02_0895 + 12230683-12230844,12230937-12230991,12231106-122311... 35 0.071
09_04_0727 + 19765175-19765384,19765523-19765595,19766476-197665... 34 0.12
08_02_1211 - 25319143-25320150,25320793-25321363,25321544-25321947 31 0.66
08_01_0068 + 471729-472460,472578-472655,473270-473507,474130-47... 31 0.66
06_02_0325 + 14428065-14428799,14428916-14428993,14429607-144298... 31 0.66
04_03_0147 - 11853940-11854128,11854933-11855013,11855501-118555... 30 1.5
02_05_0999 + 33405982-33408279,33408356-33408466,33408551-334087... 30 1.5
09_04_0602 - 18892498-18892612,18892756-18892819,18892878-188928... 29 2.7
11_02_0150 - 8816714-8817806,8817993-8818126 29 3.5
11_01_0399 - 3015654-3015702,3016160-3017202 29 4.7
08_01_0319 + 2848751-2848762,2849516-2850449,2850476-2851234,285... 29 4.7
07_03_0051 - 12831167-12832188,12832245-12832512 29 4.7
05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899... 29 4.7
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 29 4.7
12_02_0665 + 21670956-21671834,21672563-21672583 28 6.2
12_02_0226 + 15887835-15891188 28 8.1
08_02_1232 + 25429955-25430392,25430885-25431388,25432657-254328... 28 8.1
06_01_0068 - 572964-573323 28 8.1
02_01_0035 - 220036-221419,222050-222801 28 8.1
>02_04_0513 -
23569212-23569675,23569759-23569801,23569888-23570000,
23570099-23570158,23570472-23570541,23570887-23570951,
23571548-23571685,23571764-23573015
Length = 734
Score = 60.1 bits (139), Expect = 2e-09
Identities = 26/61 (42%), Positives = 39/61 (63%)
Frame = +3
Query: 12 PGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEMH 191
P Y ++K+PMDL TIR +D+G+ + +EF DV L SNA+ YN H VH A +++
Sbjct: 193 PDYFQIIKKPMDLGTIRNKLDSGSYTSPSEFAADVRLTFSNAMTYNPRGHVVHDYAIQLN 252
Query: 192 E 194
+
Sbjct: 253 K 253
>03_01_0219 +
1731267-1731728,1732148-1732235,1732330-1732417,
1732528-1732573,1732687-1732785,1734363-1734431,
1735706-1736036,1736123-1736256,1736400-1737251
Length = 722
Score = 54.4 bits (125), Expect = 8e-08
Identities = 24/67 (35%), Positives = 39/67 (58%)
Frame = +3
Query: 3 EEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAK 182
EE P Y +++ PMD +TIR + N + T +F+ DV L+ SNA+ YNS + + A+
Sbjct: 227 EELPDYHEIIEHPMDFSTIREKLLNDSYTTLEQFENDVFLLTSNAMSYNSDDTVYYRQAR 286
Query: 183 EMHEEAQ 203
+ A+
Sbjct: 287 SIEALAK 293
>04_04_1201 - 31697707-31697765,31697863-31698013,31698100-31699260
Length = 456
Score = 52.4 bits (120), Expect = 3e-07
Identities = 25/57 (43%), Positives = 33/57 (57%)
Frame = +3
Query: 18 YSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEM 188
Y V+K PMDL T+R N+ G + +F DV L SNAL YN H VH+ A ++
Sbjct: 154 YHAVIKCPMDLGTVRANLAAGRYPSHDDFAADVRLTFSNALRYNPAGHEVHTFAGDL 210
>04_04_1198 -
31679584-31679642,31679740-31679854,31680701-31680790,
31682207-31683010
Length = 355
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/57 (42%), Positives = 33/57 (57%)
Frame = +3
Query: 18 YSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEM 188
Y V+K PMDL T+R N+ G + +F D+ L SNAL YN H VH+ A ++
Sbjct: 35 YHAVIKCPMDLGTVRANLAAGRYPSHDDFAADIRLTFSNALRYNPAGHEVHTFAGDL 91
>02_02_0277 +
8489717-8491468,8491571-8491610,8491719-8491841,
8491959-8492014
Length = 656
Score = 51.6 bits (118), Expect = 6e-07
Identities = 23/57 (40%), Positives = 32/57 (56%)
Frame = +3
Query: 18 YSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEM 188
Y ++K PMDL TI+ + +G R EF DV L NA+ YN VH MA+++
Sbjct: 349 YFAIIKHPMDLGTIKTRLTHGQYRNPREFADDVRLTFHNAMTYNPKGQDVHFMAEQL 405
>08_01_0619 +
5412058-5413224,5413357-5413476,5413755-5413831,
5414201-5414321
Length = 494
Score = 50.0 bits (114), Expect = 2e-06
Identities = 22/57 (38%), Positives = 31/57 (54%)
Frame = +3
Query: 18 YSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEM 188
Y +++ PMDL T++ N+ G + F DV L SNAL YN +H VH A +
Sbjct: 171 YHAIIRNPMDLGTVKENLAFGRYPSHEAFATDVRLTFSNALRYNPADHHVHRYASNL 227
>07_03_0538 +
19231318-19231382,19231652-19232390,19232468-19232516,
19232600-19232664,19232774-19232828,19234107-19234225,
19234346-19234412,19235316-19235437,19235521-19235790
Length = 516
Score = 49.2 bits (112), Expect = 3e-06
Identities = 22/61 (36%), Positives = 35/61 (57%)
Frame = +3
Query: 12 PGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEMH 191
P Y V++ PMDL T++R + + EF DV L SNA+ YN + VH +A +++
Sbjct: 145 PDYFDVIRNPMDLGTVKRKLTSKQYSNPYEFAADVRLTFSNAMKYNPPGNDVHGIADQLN 204
Query: 192 E 194
+
Sbjct: 205 K 205
>08_01_0186 -
1561695-1561958,1562041-1562183,1562260-1562326,
1562417-1562529,1562603-1562671,1563831-1563870,
1563965-1564035,1565872-1566027,1566104-1566152,
1566228-1567631
Length = 791
Score = 47.6 bits (108), Expect = 9e-06
Identities = 22/59 (37%), Positives = 33/59 (55%)
Frame = +3
Query: 12 PGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEM 188
P Y ++K+PMDL TI + ++ G T +F DV L NA+ YN + V+ M K +
Sbjct: 194 PDYFDIIKKPMDLGTIEKKLNAGMYSTPWDFAADVRLTFDNAVTYNPVGNDVNLMGKTL 252
>01_01_0802 +
6246267-6247541,6247625-6247682,6247806-6248129,
6248321-6248355
Length = 563
Score = 47.6 bits (108), Expect = 9e-06
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +3
Query: 18 YSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEM 188
Y ++ +PMDL T++ + G+ ++ EF DV L NA+ YN VH MA+++
Sbjct: 176 YHTIITKPMDLGTVKSRLAAGHYKSPREFAGDVRLTFQNAMRYNPKGQDVHFMAEQL 232
>06_01_0273 +
2022479-2022592,2022830-2022973,2023524-2023601,
2025361-2025585,2025684-2025782,2026177-2026235,
2026351-2026501,2026590-2026754
Length = 344
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Frame = +3
Query: 18 YSVVVKRPMDLTTIRRNI---DNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEM 188
Y ++ +PMD +TI++ + D+ E DV L+ +NA+ YN H VH MAK +
Sbjct: 110 YYKIITKPMDFSTIQKKMEGKDDNKYNNVREIYSDVRLIFANAMKYNDERHDVHIMAKSL 169
Query: 189 HEE 197
E+
Sbjct: 170 LEK 172
>06_03_0924 - 25976629-25976979,25977471-25978424,25978512-25978565,
25979135-25979254,25979357-25979532,25979624-25980107,
25980541-25980744,25981671-25981877,25982179-25982271,
25982433-25982621,25983364-25983423,25983591-25983927,
25984195-25984432,25984614-25984816,25985549-25986554,
25987125-25987290,25987715-25987824,25987944-25988195,
25988360-25988402,25988488-25988550,25989512-25989624,
25990787-25990838
Length = 1824
Score = 44.4 bits (100), Expect = 9e-05
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +3
Query: 3 EEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEH-SVHSMA 179
+EAP Y +++RPMDL TIR + + +F+ DV + NA YN H + +A
Sbjct: 1738 KEAPDYFDIIERPMDLGTIRDKVRKMEYKNREDFRHDVAQIALNAHTYNLNRHPHIPPLA 1797
Query: 180 KEMHE 194
E+ E
Sbjct: 1798 DELLE 1802
>01_06_0069 - 26169818-26169904,26170186-26170893
Length = 264
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = +3
Query: 18 YSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEMHE 194
Y + + PMDL T+RR ++ F DV L +NA+ YNS V+ A E+ E
Sbjct: 86 YYLRISDPMDLGTVRRRLERRRYADPWAFAADVRLTFNNAMSYNSAGDPVYESAAELSE 144
>07_03_0562 +
19535801-19535865,19535972-19536017,19536125-19536223,
19536588-19536674,19537545-19537613,19537702-19538710,
19539217-19539365,19539453-19540487,19540488-19541003
Length = 1024
Score = 32.3 bits (70), Expect(2) = 0.002
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 3 EEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQ 107
EE P Y V++ PMD T+RR + R+ +F+
Sbjct: 36 EELPDYHDVIEHPMDFGTVRRKLARNAYRSFEQFE 70
Score = 26.6 bits (56), Expect(2) = 0.002
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 7/36 (19%)
Frame = +3
Query: 111 DVLLMLSNALIYNSTE-------HSVHSMAKEMHEE 197
DV L+ SNA+ YN+ + HS+H +A++ +E
Sbjct: 101 DVFLICSNAMQYNAPDTIYFRQAHSIHELARKKFQE 136
>10_08_0006 -
14035990-14036135,14036246-14036339,14036845-14037176,
14038040-14038094,14038682-14038750,14038940-14039039,
14039212-14039255,14039705-14039873,14040262-14040333,
14040439-14040519,14040586-14040650,14040796-14041260
Length = 563
Score = 37.1 bits (82), Expect = 0.013
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 6 EAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAE-FQRDVLLMLSNALIYNSTE 158
+ P Y ++K P+DL T+ + +++ T E F D+ M SNA YNS +
Sbjct: 503 DVPDYYDIIKDPIDLKTMSKRVESEQYYVTLEMFVADMKRMFSNAKTYNSPD 554
>09_06_0192 -
21450158-21450276,21451084-21451573,21451750-21451862,
21451992-21452376,21452461-21452529,21453165-21453264,
21454465-21454637,21454737-21454782,21454879-21454954,
21455160-21455196,21455799-21456041
Length = 616
Score = 35.1 bits (77), Expect = 0.054
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 3 EEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDV 116
EE P Y ++K PMD +TIR+ ++ G +F+ V
Sbjct: 133 EELPDYHDIIKHPMDFSTIRKKLNKGAYGNLEQFEVSV 170
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 99 EFQRDVLLMLSNALIYNSTEHSVHSMAKEMHEEAQ 203
E Q DV L+ SNA+ YNS + + A+ + E A+
Sbjct: 223 EPQDDVFLLTSNAMCYNSPDTIYYRQARAIQELAK 257
>03_02_0895 +
12230683-12230844,12230937-12230991,12231106-12231169,
12231292-12231334,12231509-12231607,12231710-12231778,
12231912-12232245,12232317-12232471,12232592-12233287
Length = 558
Score = 34.7 bits (76), Expect = 0.071
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +3
Query: 18 YSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEMHEE 197
Y+ V RP D T+R+ +G T +F+ DV ++ A+ NS + + A + +
Sbjct: 112 YAERVNRPGDFATLRQKNKDGMYNTLEQFENDVYMVFQKAMSINSEDTIPYREAMSLLHQ 171
Query: 198 AQ 203
A+
Sbjct: 172 AK 173
>09_04_0727 + 19765175-19765384,19765523-19765595,19766476-19766570,
19766666-19768450,19768533-19768721,19768816-19768958,
19769075-19769320,19769975-19770059,19770117-19770191,
19770304-19770369,19770466-19770712,19770824-19771242
Length = 1210
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = +3
Query: 69 IDNGNIRTTAEFQRDVLLMLSNALIYNSTEHS---VHSMAKEMHEEAQCQLGML 221
+D+G T A F +D+ L++SNA YN ++++ + S A E+ + Q L +
Sbjct: 944 VDSGQYLTRASFMKDIDLIVSNAKTYNGSDYNGSRIVSRACELRDVVQGMLSQM 997
>08_02_1211 - 25319143-25320150,25320793-25321363,25321544-25321947
Length = 660
Score = 31.5 bits (68), Expect = 0.66
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Frame = +3
Query: 3 EEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTA--------EFQRDVLLMLSNALIYNSTE 158
++ YS ++R +DL T+R + A EF RD++L+ +NAL++
Sbjct: 325 QDGERYSGTIRRHVDLETVRSRLVGATAAAAAAACYASASEFYRDMMLLCANALVFFPRG 384
Query: 159 HSVHSMAKEM 188
H+ A ++
Sbjct: 385 SPEHAAALQL 394
>08_01_0068 +
471729-472460,472578-472655,473270-473507,474130-474205,
474820-474961,475326-475619,476037-476249
Length = 590
Score = 31.5 bits (68), Expect = 0.66
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +3
Query: 12 PGYSVVVKRPMDLTTIRRNIDNGN-IRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEM 188
P Y ++ PMD TI +N++ G+ + + +DV + N YNS + + K +
Sbjct: 270 PDYFDIIDTPMDFGTICQNLERGDKYMNSEDVYKDVQFIWDNCTKYNSKGDYIIELMKRV 329
>06_02_0325 +
14428065-14428799,14428916-14428993,14429607-14429844,
14431199-14431296,14431770-14432063,14432418-14432702
Length = 575
Score = 31.5 bits (68), Expect = 0.66
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +3
Query: 12 PGYSVVVKRPMDLTTIRRNIDNGN-IRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEM 188
P Y ++ PMD TI +N++ G+ + + +DV + N YNS + + K +
Sbjct: 271 PDYFDIIDTPMDFGTICQNLERGDKYMNSEDVYKDVQFIWDNCTKYNSKGDYIIELMKRV 330
>04_03_0147 -
11853940-11854128,11854933-11855013,11855501-11855584,
11855663-11855735,11855888-11855949,11856246-11856327,
11857643-11858262
Length = 396
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +2
Query: 2 RGGARVQRRREAA---HGPHHDPQEHRQRKHQDDGRVPARRAPDAVQCPHLQQ 151
RGGAR + R AA HG DP++ DGR A +P+ + P Q+
Sbjct: 99 RGGARERAERWAAAHLHGGGGDPRDRALADGNPDGRGRAGGSPEPARGPRRQR 151
>02_05_0999 +
33405982-33408279,33408356-33408466,33408551-33408703,
33408870-33409033,33409113-33409210,33409296-33409474,
33409588-33409675,33410285-33410451
Length = 1085
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 259 PPLRRKRRRHHSPLHHPAHYTRPH 330
PPL+ RRR +SP+H + Y PH
Sbjct: 496 PPLQSLRRRANSPVHTGSPYESPH 519
>09_04_0602 -
18892498-18892612,18892756-18892819,18892878-18892884,
18893980-18894153
Length = 119
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = +1
Query: 229 AQAHAGLCAAPPLRRKRRRHHSPLHHPAHYTRPH 330
A A A LCAAP R H+ L HP H R H
Sbjct: 15 AAAAALLCAAPRPRVSTPPAHARLIHPPHSARTH 48
>11_02_0150 - 8816714-8817806,8817993-8818126
Length = 408
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 202 SVSSACWWLAQAHAGLCAAPPLRRKRRRHHSPLH 303
+V S WW Q H G C P + R + +P+H
Sbjct: 111 AVKSQKWW--QKHCGACCCSPNPGRDRANEAPMH 142
>11_01_0399 - 3015654-3015702,3016160-3017202
Length = 363
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 256 APPLRRKRRRHHSPLHHPAHYT 321
APPL R+ R P +HP HYT
Sbjct: 61 APPLSRRERIALLPPNHPYHYT 82
>08_01_0319 +
2848751-2848762,2849516-2850449,2850476-2851234,
2851793-2851850,2851900-2852179
Length = 680
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 223 WLAQAHAGLCAAPPLRRKRRRHHSPLHHP 309
WL AHAG+ P + ++R+ H P P
Sbjct: 483 WLLLAHAGMETFPEMLQRRQLFHLPTEEP 511
>07_03_0051 - 12831167-12832188,12832245-12832512
Length = 429
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +3
Query: 60 RRNIDNGNIRTTAEFQRDVLLMLSNALIY--NSTEHSVHSMAKEMHEEAQCQLGMLVA 227
R +D G +R + RD SN ++Y + +E EE C+ G+++A
Sbjct: 349 RLGLDGGKLRASRSALRDFGNASSNTIVYVLENMVEETRQRREEAAEEEDCEWGLILA 406
>05_05_0155 +
22787658-22787930,22788029-22788096,22789600-22789915,
22790207-22790323
Length = 257
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Frame = +1
Query: 256 APPLRRKRRRHHSPLH---HPAHYTRPH 330
APP R HH P H HP H+ PH
Sbjct: 25 APPPPHLRHPHHHPPHHHPHPPHHHPPH 52
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 11/72 (15%)
Frame = +2
Query: 41 HGPHHDPQEHRQRKHQDDGRVPARR------APDAVQCPHLQQHGAQRTLDGE-----GD 187
HG HH+ Q+ +Q H P P + QCP LQ+ + G+ GD
Sbjct: 45 HGHHHEQQQQQQHHHHLGPPPPPPPHPHNPFLPSSAQCPSLQEFRGMAPMLGKRPMSYGD 104
Query: 188 ARGGSVSARHAG 223
GG G
Sbjct: 105 GGGGGDEVNGGG 116
>12_02_0665 + 21670956-21671834,21672563-21672583
Length = 299
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -1
Query: 282 PPLPPQRGGGAQPGVRL 232
PP PP GGG PGV L
Sbjct: 95 PPAPPSGGGGEAPGVDL 111
>12_02_0226 + 15887835-15891188
Length = 1117
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 199 LSVSSACWWLAQAHAGLCAAPPLRRKRRRHHSPLHHPA 312
++ SA L + + AA PL +RRR H LH P+
Sbjct: 1 MATRSAAARLLSSSSAAAAASPLWSRRRRRHPFLHPPS 38
>08_02_1232 +
25429955-25430392,25430885-25431388,25432657-25432803,
25432999-25433106,25433242-25433331
Length = 428
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -2
Query: 125 HQEHVALELGRRPDVSVVDVPADRGEVHGPLHD 27
H+E + + RPD +VV V G+VHG LHD
Sbjct: 77 HREPNLVRVDPRPDQAVVVV----GDVHGQLHD 105
>06_01_0068 - 572964-573323
Length = 119
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +2
Query: 14 RVQRRREAAHGPHHDPQEHRQRKHQDDGRVPARRAPDAVQCPHLQQHGAQRTLDGEG 184
RV R+R H H R+R+H +G RRAP H+ A +DG+G
Sbjct: 33 RVLRQRGTHHDGKHRRSRGRRRQHGGEG----RRAPGGGVAAHV----ADEVVDGDG 81
>02_01_0035 - 220036-221419,222050-222801
Length = 711
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = +2
Query: 35 AAHGPHHD--PQEHRQRKHQDDGRVPARRAPDAVQCPHLQQH 154
A H PH ++H +KHQ PAR AP H H
Sbjct: 102 AGHHPHLQLFHEQHHHQKHQQQPPPPARWAPQHHHHHHPHHH 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,879,465
Number of Sequences: 37544
Number of extensions: 293291
Number of successful extensions: 1191
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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