Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0276
(696 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0) 52 3e-07
SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_34678| Best HMM Match : Bromodomain (HMM E-Value=9e-25) 52 6e-07
SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38) 49 4e-06
SB_2262| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_32425| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 9e-05
SB_48561| Best HMM Match : AAA (HMM E-Value=0) 43 3e-04
SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_10642| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_4331| Best HMM Match : Bromodomain (HMM E-Value=3.30006e-41) 35 0.055
SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.072
SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.096
SB_55405| Best HMM Match : Bromodomain (HMM E-Value=5.5e-16) 34 0.13
SB_737| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-35) 33 0.29
SB_10665| Best HMM Match : PT (HMM E-Value=6.2) 31 0.67
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 29 3.6
SB_57048| Best HMM Match : S-antigen (HMM E-Value=3.4) 28 6.3
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
>SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1449
Score = 53.6 bits (123), Expect = 1e-07
Identities = 24/60 (40%), Positives = 36/60 (60%)
Frame = +3
Query: 9 APGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEM 188
APGYS V+ PMD +TI+ ID+ + T F+ D LM +NA++YN+ + AK +
Sbjct: 1283 APGYSRVITHPMDFSTIKTKIDSNSYTTIEAFRDDFYLMCNNAMVYNAPDTIYFKAAKRI 1342
>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
Length = 2276
Score = 52.4 bits (120), Expect = 3e-07
Identities = 24/73 (32%), Positives = 40/73 (54%)
Frame = +3
Query: 18 YSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEMHEE 197
Y +V+ PMDL+TI+R +DNG + E+ DV LM NA +YN V+ ++ E
Sbjct: 919 YFEIVRNPMDLSTIKRKLDNGQYKNPWEYCDDVWLMFDNAWLYNRKTSRVYKYCTKLSEV 978
Query: 198 AQCQLGMLVACAG 236
+ ++ ++ G
Sbjct: 979 FESEIDPVMKLLG 991
>SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 786
Score = 52.0 bits (119), Expect = 4e-07
Identities = 21/59 (35%), Positives = 36/59 (61%)
Frame = +3
Query: 18 YSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEMHE 194
Y ++K+PMD+T I+ ++N + +EF D+ LM SN YN +H V MA+++ +
Sbjct: 355 YHDIIKQPMDMTEIKNKLENRAYDSPSEFAADIRLMFSNCYRYNPPDHDVVKMARQLQD 413
Score = 45.2 bits (102), Expect = 5e-05
Identities = 20/70 (28%), Positives = 35/70 (50%)
Frame = +3
Query: 12 PGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEMH 191
P Y ++K+PMDL TI++ ++N E D LM++N YN + M + M
Sbjct: 148 PDYHTIIKKPMDLGTIKKKLENNEYPCAQECIEDFRLMINNCYTYNKPGDDIVLMCQSMD 207
Query: 192 EEAQCQLGML 221
+ ++ M+
Sbjct: 208 KLFHQKIAMM 217
>SB_34678| Best HMM Match : Bromodomain (HMM E-Value=9e-25)
Length = 1137
Score = 51.6 bits (118), Expect = 6e-07
Identities = 22/69 (31%), Positives = 41/69 (59%)
Frame = +3
Query: 3 EEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAK 182
++ P Y V+K PMD+ T+R+++ +G R+ EF +V L+ +N+++YN H A
Sbjct: 826 KQVPDYYEVIKNPMDIETLRQHVQDGMCRSREEFLENVKLLHTNSVLYNGENHEFTKTAN 885
Query: 183 EMHEEAQCQ 209
++ A C+
Sbjct: 886 SIY--AACE 892
>SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)
Length = 1301
Score = 48.8 bits (111), Expect = 4e-06
Identities = 22/60 (36%), Positives = 30/60 (50%)
Frame = +3
Query: 9 APGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEM 188
AP Y +++ PMDL+TI +D T EFQ D+ LM N L YN + M +
Sbjct: 385 APQYHEIIENPMDLSTIEEKLDTSKYATLDEFQSDMKLMFENCLEYNGPDSMYTKMGNTL 444
>SB_2262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 688
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/61 (31%), Positives = 34/61 (55%)
Frame = +3
Query: 6 EAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKE 185
+APGY V++ PMD T++ +++G + F D++L+ +N YN H V + E
Sbjct: 576 DAPGYYKVIRTPMDFGTVKHKLESGVYDDYSAFHDDMMLVKNNCFCYNPQGHDVRNDCDE 635
Query: 186 M 188
+
Sbjct: 636 V 636
>SB_32425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 44.4 bits (100), Expect = 9e-05
Identities = 19/66 (28%), Positives = 37/66 (56%)
Frame = +3
Query: 6 EAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKE 185
E Y V+K+PMD +T+R ID+ T +F+ D L++ N + YN+ + + A +
Sbjct: 633 EVLDYLDVIKQPMDFSTMRSRIDSNFYHTIEQFEADFNLIIENCMAYNAQDTIYYRAALK 692
Query: 186 MHEEAQ 203
+ ++ +
Sbjct: 693 LRDQGR 698
>SB_48561| Best HMM Match : AAA (HMM E-Value=0)
Length = 2021
Score = 42.7 bits (96), Expect = 3e-04
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +3
Query: 3 EEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYN 149
EE Y V++ PMDL+T+ ID T A + D+ L+ SNAL YN
Sbjct: 1459 EEVEDYLDVIQEPMDLSTMMEKIDRHQYSTCANYLLDIDLITSNALKYN 1507
>SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1125
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/76 (25%), Positives = 40/76 (52%)
Frame = +3
Query: 3 EEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAK 182
E+ Y V +P+DL+ + +N+ + +T +F+ +L NA+IY + + +A+
Sbjct: 536 EKYDDYLQFVIKPVDLSLLEKNVRKKHYKTAKQFREHAQWILHNAIIYFGEDRELTELAE 595
Query: 183 EMHEEAQCQLGMLVAC 230
+ E+ +L +V C
Sbjct: 596 AIMEDCDGELEEMVRC 611
>SB_10642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1023
Score = 37.9 bits (84), Expect = 0.008
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 3 EEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYN 149
++ P Y ++K+P+D+ IR I++ R + D LM NA YN
Sbjct: 883 KDLPDYYQIIKQPVDIRKIRERINSHKYRCLEDLDEDFTLMCRNAQTYN 931
>SB_4331| Best HMM Match : Bromodomain (HMM E-Value=3.30006e-41)
Length = 305
Score = 35.1 bits (77), Expect = 0.055
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +3
Query: 6 EAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMA 179
EAP Y +K PMDL T+ + +G + F D+ + N YNS + + A
Sbjct: 232 EAPDYYEHIKYPMDLKTMTERLKSGYYSSKKLFVADMRRIFQNCRTYNSPDTEYYKCA 289
>SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 34.7 bits (76), Expect = 0.072
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = +3
Query: 9 APGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIY---NSTEHSVHSMA 179
+P Y V+ P+DL I++ + F D+ L+L NAL Y +S E+ +
Sbjct: 54 SPEYYDVISTPIDLLKIQQRLKTDEYEDVGTFTADMELLLDNALKYYKPDSQEYQDATQL 113
Query: 180 KEMHEEAQCQLG 215
K++ +E + + G
Sbjct: 114 KQVFDELKEEQG 125
Score = 33.5 bits (73), Expect = 0.17
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +3
Query: 12 PGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEM 188
P Y V+K+P+ L IR I +G + + ++ L +NA YN ++ A+ M
Sbjct: 369 PDYYEVIKKPIALMKIRSQIKSGLYDSLEALETELELCFNNAKTYNEPNSMLYKDAERM 427
>SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 552
Score = 34.3 bits (75), Expect = 0.096
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 12 PGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHS-VHSM 176
P Y+ V++PMD +T+ R + D+ L+ SN+ YN+ S ++SM
Sbjct: 123 PDYTDYVEQPMDFSTVWRKFVENQYSDPEQLVSDIRLVFSNSRAYNTQPRSRIYSM 178
>SB_55405| Best HMM Match : Bromodomain (HMM E-Value=5.5e-16)
Length = 657
Score = 33.9 bits (74), Expect = 0.13
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +3
Query: 3 EEAPGYSVVVKRPMDLTTIRRNIDNGNIR---TTAEFQRDVLLMLSNALIYNSTEHSVHS 173
+ P Y V+ PMDL+TIR I + + + EF D L+ SN +N +
Sbjct: 521 KSVPNYYKVITHPMDLSTIRAKIQPQHFQHYSSITEFLSDCQLIFSNCATFNDDLPECFA 580
Query: 174 MAKEM 188
+ K++
Sbjct: 581 IRKDI 585
>SB_737| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-35)
Length = 432
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 12 PGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYN 149
P Y + PMDL+ ++ + + + EF RD+ L+ SN +N
Sbjct: 2 PEYYKQIANPMDLSIVKEKLHSYQYHSVVEFVRDMNLIFSNCKDFN 47
>SB_10665| Best HMM Match : PT (HMM E-Value=6.2)
Length = 215
Score = 31.5 bits (68), Expect = 0.67
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = +2
Query: 41 HGPHHDPQEHRQRKHQDDGRVPARRAPDAVQCPHLQQHGAQRTLDG 178
HGPH DP R H D R P D + H RT G
Sbjct: 30 HGPHTDPTRTRHGPHTDTTRTPHGHDTDPTRTRHGPHTDTTRTPHG 75
Score = 31.5 bits (68), Expect = 0.67
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +2
Query: 41 HGPHHDPQEHRQRKHQDDGRVPARRAPDAVQCPH 142
HGPH DP R H D R P R D + H
Sbjct: 151 HGPHTDPTWTPHRPHMDPTRTPHRPHMDPTRTSH 184
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +2
Query: 32 EAAHGPHHDPQEHRQRKHQDDGRVPARRAPDAVQCPH 142
+ HGPH +P + H D P R D + PH
Sbjct: 115 QTQHGPHTNPTQTPHGPHTDPTWTPHRPNTDPTRTPH 151
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/46 (32%), Positives = 17/46 (36%)
Frame = +2
Query: 32 EAAHGPHHDPQEHRQRKHQDDGRVPARRAPDAVQCPHLQQHGAQRT 169
+ HGPH DP R + D R P D PH RT
Sbjct: 126 QTPHGPHTDPTWTPHRPNTDPTRTPHGPHTDPTWTPHRPHMDPTRT 171
>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
Length = 1079
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +2
Query: 17 VQRRREAAHGPHHDPQEHRQRKHQDDGRVPARRAPDAVQCPHLQQHGAQRTLDG--EGDA 190
+ R + H HH + H KH+ R +RR Q H + + AQ TL+ E DA
Sbjct: 828 LNRPPQDRHRRHHHRRRHHNNKHRKHSREHSRRRH---QRKHHKGNDAQETLEEIFEDDA 884
Query: 191 R 193
R
Sbjct: 885 R 885
>SB_57048| Best HMM Match : S-antigen (HMM E-Value=3.4)
Length = 242
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/49 (28%), Positives = 19/49 (38%)
Frame = +2
Query: 32 EAAHGPHHDPQEHRQRKHQDDGRVPARRAPDAVQCPHLQQHGAQRTLDG 178
+ H P+ DP + + R H D + P D PH RT G
Sbjct: 160 QTQHRPNTDPTQTQHRPHTDPTQTPHGPHTDPTWTPHRPNTDPTRTPHG 208
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +2
Query: 32 EAAHGPHHDPQEHRQRKHQDDGRVPARRAPDAVQCPH 142
+ HGPH DP R + D R P D PH
Sbjct: 182 QTPHGPHTDPTWTPHRPNTDPTRTPHGPHTDPTWTPH 218
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +1
Query: 262 PLRRKRRRHHSPLHHPAHYTRPH*EGTA---TRARNVTHNRSLKRLVSELNKQ 411
P RR+R R SP HH +H +R +R+R+ TH R R S K+
Sbjct: 240 PRRRRRSRSPSP-HHRSHRSRSRSRSPRRRHSRSRSPTHRRHRSRSHSPEKKK 291
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,072,751
Number of Sequences: 59808
Number of extensions: 309023
Number of successful extensions: 1027
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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