Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0276
         (696 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY645022-1|AAT92558.1|  165|Anopheles gambiae hairy protein.           28   0.24 
U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         27   0.56 
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         27   0.56 
M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.              27   0.56 
AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         26   0.99 
AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein p...    25   1.7  
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    25   3.0  
AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific tran...    25   3.0  
AY725820-1|AAU50568.1|  593|Anopheles gambiae fruitless female-s...    25   3.0  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    24   4.0  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    24   4.0  
AJ439060-5|CAD27756.1|  245|Anopheles gambiae putative deoxynucl...    24   5.3  
AF488801-1|AAO49462.1|  246|Anopheles gambiae multisubstrate deo...    24   5.3  
AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic acetylch...    23   7.0  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    23   9.2  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            23   9.2  
AJ973472-1|CAJ01519.1|  168|Anopheles gambiae hypothetical prote...    23   9.2  
AJ697732-1|CAG26925.1|  168|Anopheles gambiae putative chemosens...    23   9.2  

>AY645022-1|AAT92558.1|  165|Anopheles gambiae hairy protein.
          Length = 165

 Score = 28.3 bits (60), Expect = 0.24
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 47  PHHDPQEHRQRKHQDDGR 100
           P+HD  E  + KH DDG+
Sbjct: 143 PYHDEDEDHEMKHDDDGK 160


>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 27.1 bits (57), Expect = 0.56
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = +1

Query: 253 AAPPLRRKRRRHHSPLHHPAHYTRPH*EGTATRARNVTHNRSLKRLVSE 399
           A PP   +   HH   HHP H   P  + +   +   + + S+  ++S+
Sbjct: 89  AQPPHHHQHPHHHQLPHHPHHQHHPQQQPSPQTSPPASISFSITNILSD 137


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 27.1 bits (57), Expect = 0.56
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = +1

Query: 253 AAPPLRRKRRRHHSPLHHPAHYTRPH*EGTATRARNVTHNRSLKRLVSE 399
           A PP   +   HH   HHP H   P  + +   +   + + S+  ++S+
Sbjct: 89  AQPPHHHQHPHHHQLPHHPHHQHHPQQQPSPQTSPPASISFSITNILSD 137


>M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.
          Length = 613

 Score = 27.1 bits (57), Expect = 0.56
 Identities = 17/58 (29%), Positives = 22/58 (37%)
 Frame = +2

Query: 8   GARVQRRREAAHGPHHDPQEHRQRKHQDDGRVPARRAPDAVQCPHLQQHGAQRTLDGE 181
           GA   R R    GP    Q  +Q++HQ   R   ++     Q    QQ   QR    E
Sbjct: 204 GAHSSRNRRGRQGPQQQEQRQQQQQHQQ--REQQQQQQQQQQQQQQQQQQQQRNQQRE 259


>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 26.2 bits (55), Expect = 0.99
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 280 RRHHSPLHHPAHYTRPH*EGTATRARNVTHN 372
           ++HH  +HHPAH+   H +  A  A +  H+
Sbjct: 132 QQHHPSVHHPAHHPL-HYQPAAAAAMHHHHH 161



 Score = 24.6 bits (51), Expect = 3.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 259 PPLRRKRRRHHSPLHHPAHY 318
           P +++     H P HHP HY
Sbjct: 129 PHVQQHHPSVHHPAHHPLHY 148


>AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein
           protein.
          Length = 527

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +2

Query: 20  QRRREAAHGPHHDPQEHRQRKHQDDGRVPARRAPDAV 130
           ++ ++  H  +   Q+ R   HQ + R P R+ PD +
Sbjct: 271 RQHQQWPHQQNGQQQQQRMGIHQQEKRRPRRKRPDEI 307


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 15/59 (25%), Positives = 19/59 (32%)
 Frame = +2

Query: 50  HHDPQEHRQRKHQDDGRVPARRAPDAVQCPHLQQHGAQRTLDGEGDARGGSVSARHAGG 226
           HH  Q+H     Q   + P+ +        H   H  Q    G G   GG       GG
Sbjct: 253 HHQQQQHPSSHQQQSQQHPSSQHQQPTHQTHHHHHHHQHG-GGVGGGGGGGGGGGGGGG 310


>AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific
           transcription factor FRU-MB protein.
          Length = 759

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 15/59 (25%), Positives = 19/59 (32%)
 Frame = +2

Query: 50  HHDPQEHRQRKHQDDGRVPARRAPDAVQCPHLQQHGAQRTLDGEGDARGGSVSARHAGG 226
           HH  Q+H     Q   + P+ +        H   H  Q    G G   GG       GG
Sbjct: 253 HHQQQQHPSSHQQQSQQHPSSQHQQPTHQTHHHHHHHQHG-GGVGGGGGGGGGGGGGGG 310


>AY725820-1|AAU50568.1|  593|Anopheles gambiae fruitless
           female-specific zinc-fingerC isoform protein.
          Length = 593

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 15/59 (25%), Positives = 19/59 (32%)
 Frame = +2

Query: 50  HHDPQEHRQRKHQDDGRVPARRAPDAVQCPHLQQHGAQRTLDGEGDARGGSVSARHAGG 226
           HH  Q+H     Q   + P+ +        H   H  Q    G G   GG       GG
Sbjct: 205 HHQQQQHPSSHQQQSQQHPSSQHQQPTHQTHHHHHHHQHG-GGVGGGGGGGGGGGGGGG 262


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
           protein.
          Length = 1645

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 172 ECTLCSVLL*MRALDSIRSTSRWNSAVVLMFPLSMFLR 59
           E  +C+ +L  +      +TS W S  VL   L +FLR
Sbjct: 81  EAFICTPVLSRQRATRAPTTSTWTSKSVLCEELFLFLR 118


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 282 PPLPPQRGGGAQPGVRLRKPPA 217
           P +PP    G QPG++ R P A
Sbjct: 230 PQMPPGAVPGMQPGMQPRPPSA 251


>AJ439060-5|CAD27756.1|  245|Anopheles gambiae putative
           deoxynucleoside kinase protein.
          Length = 245

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 36  RPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSV 167
           RP  +  +  ++D   I   AE++R    +L   LI N+ +H++
Sbjct: 192 RPAPVLVLNADLDLNTIG--AEYERSETSILKPILIENTNQHAI 233


>AF488801-1|AAO49462.1|  246|Anopheles gambiae multisubstrate
           deoxyribonucleoside kinaseprotein.
          Length = 246

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 36  RPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSV 167
           RP  +  +  ++D   I   AE++R    +L   LI N+ +H++
Sbjct: 193 RPAPVLVLNADLDLNTIG--AEYERSETSILKPILIENTNQHAI 234


>AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 9 protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 604 GQIENRLIFSIFNIIYL*CSF 542
           G + NRL F ++ +I++ C+F
Sbjct: 383 GLVLNRLSFVVYCVIFIICAF 403


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskeletal
            structural protein protein.
          Length = 1645

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 259  PPLRRKRRRHHSPLHHPAHYTRPH*EG 339
            PP R +   + S LHH  H+   H  G
Sbjct: 1301 PPSRSEDTLNSSHLHHHLHHGHHHHHG 1327


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 110  ALELGRRPDVSVVDVPADRGE 48
            AL+LG   D+  VDV  ++GE
Sbjct: 1403 ALKLGDTVDIVAVDVLVEKGE 1423


>AJ973472-1|CAJ01519.1|  168|Anopheles gambiae hypothetical protein
           protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 38  AHGPHHDPQEHRQRKHQDD 94
           AH   H+ Q+H  R+ Q D
Sbjct: 148 AHATEHNSQDHDHREGQSD 166


>AJ697732-1|CAG26925.1|  168|Anopheles gambiae putative chemosensory
           protein CSP3 protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 38  AHGPHHDPQEHRQRKHQDD 94
           AH   H+ Q+H  R+ Q D
Sbjct: 148 AHATEHNSQDHDHREGQSD 166


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 618,179
Number of Sequences: 2352
Number of extensions: 10462
Number of successful extensions: 58
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70668195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)