Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0276
(696 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g76380.2 68414.m08875 DNA-binding bromodomain-containing prot... 62 3e-10
At1g76380.1 68414.m08874 DNA-binding bromodomain-containing prot... 62 3e-10
At1g20670.1 68414.m02589 DNA-binding bromodomain-containing prot... 61 8e-10
At1g76380.3 68414.m08876 DNA-binding bromodomain-containing prot... 60 2e-09
At5g55040.1 68418.m06859 DNA-binding bromodomain-containing prot... 56 3e-08
At3g27260.1 68416.m03407 DNA-binding bromodomain-containing prot... 53 2e-07
At5g46550.1 68418.m05731 DNA-binding bromodomain-containing prot... 51 8e-07
At3g01770.1 68416.m00116 DNA-binding bromodomain-containing prot... 50 1e-06
At5g63330.1 68418.m07948 DNA-binding bromodomain-containing prot... 49 3e-06
At5g65630.1 68418.m08256 DNA-binding bromodomain-containing prot... 49 3e-06
At1g73150.1 68414.m08460 DNA-binding bromodomain-containing prot... 49 3e-06
At5g10550.1 68418.m01221 DNA-binding bromodomain-containing prot... 48 4e-06
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 48 4e-06
At5g14270.1 68418.m01669 DNA-binding bromodomain-containing prot... 46 2e-05
At2g34900.2 68415.m04284 DNA-binding bromodomain-containing prot... 46 2e-05
At2g34900.1 68415.m04285 DNA-binding bromodomain-containing prot... 46 2e-05
At1g17790.1 68414.m02202 DNA-binding bromodomain-containing prot... 45 4e-05
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ... 45 6e-05
At1g06230.2 68414.m00659 DNA-binding bromodomain-containing prot... 42 3e-04
At1g06230.1 68414.m00658 DNA-binding bromodomain-containing prot... 42 3e-04
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1... 42 4e-04
At3g52280.1 68416.m05746 DNA-binding bromodomain-containing prot... 40 0.002
At2g44430.1 68415.m05525 DNA-binding bromodomain-containing prot... 38 0.006
At2g42150.1 68415.m05217 DNA-binding bromodomain-containing prot... 38 0.006
At3g60110.1 68416.m06712 DNA-binding bromodomain-containing prot... 38 0.008
At3g54610.1 68416.m06042 histone acetyltransferase (GCN5) nearly... 35 0.045
At1g58025.1 68414.m06576 DNA-binding bromodomain-containing prot... 32 0.32
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 29 2.2
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 29 2.2
At1g64770.1 68414.m07344 expressed protein 29 2.2
At1g28120.1 68414.m03445 expressed protein 29 2.2
At3g44750.1 68416.m04817 histone deacetylase, putative (HD2A) co... 28 6.8
>At1g76380.2 68414.m08875 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 580
Score = 62.5 bits (145), Expect = 3e-10
Identities = 28/73 (38%), Positives = 45/73 (61%)
Frame = +3
Query: 3 EEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAK 182
EE P Y ++K PMD TT+R+ +++G T +F++DV L+ +NA+ YNS + + A+
Sbjct: 173 EELPDYYEIIKNPMDFTTLRKKLESGAYTTLEQFEQDVFLICTNAMEYNSADTVYYRQAR 232
Query: 183 EMHEEAQCQLGML 221
M E A+ G L
Sbjct: 233 AMLELAKKDFGNL 245
>At1g76380.1 68414.m08874 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 579
Score = 62.5 bits (145), Expect = 3e-10
Identities = 28/73 (38%), Positives = 45/73 (61%)
Frame = +3
Query: 3 EEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAK 182
EE P Y ++K PMD TT+R+ +++G T +F++DV L+ +NA+ YNS + + A+
Sbjct: 172 EELPDYYEIIKNPMDFTTLRKKLESGAYTTLEQFEQDVFLICTNAMEYNSADTVYYRQAR 231
Query: 183 EMHEEAQCQLGML 221
M E A+ G L
Sbjct: 232 AMLELAKKDFGNL 244
>At1g20670.1 68414.m02589 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 652
Score = 60.9 bits (141), Expect = 8e-10
Identities = 26/67 (38%), Positives = 42/67 (62%)
Frame = +3
Query: 3 EEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAK 182
EE P Y ++K PMD +T+R +D+G T +F+RDV L+ +NA+ YNS + + A+
Sbjct: 203 EELPDYFEIIKNPMDFSTLRNKLDSGAYSTLEQFERDVFLICTNAMEYNSADTVYYRQAR 262
Query: 183 EMHEEAQ 203
+ E A+
Sbjct: 263 AIQELAK 269
>At1g76380.3 68414.m08876 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 579
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/73 (36%), Positives = 44/73 (60%)
Frame = +3
Query: 3 EEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAK 182
EE P Y ++K PMD TT+R+ +++G T +F+ +V L+ +NA+ YNS + + A+
Sbjct: 172 EELPDYYEIIKNPMDFTTLRKKLESGAYTTLEQFEANVFLICTNAMEYNSADTVYYRQAR 231
Query: 183 EMHEEAQCQLGML 221
M E A+ G L
Sbjct: 232 AMLELAKKDFGNL 244
>At5g55040.1 68418.m06859 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 145
Score = 55.6 bits (128), Expect = 3e-08
Identities = 23/52 (44%), Positives = 36/52 (69%)
Frame = +3
Query: 3 EEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTE 158
EE P Y +++ PMD +T+R+ + NG+ T E + DVLL+ SNA+ YNS++
Sbjct: 74 EELPDYHDMIEHPMDFSTVRKKLANGSYSTLEELESDVLLICSNAMQYNSSD 125
>At3g27260.1 68416.m03407 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 813
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/55 (41%), Positives = 32/55 (58%)
Frame = +3
Query: 12 PGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSM 176
P Y +K PMDL T+++N+ +G + EF DV L +NA+ YN H VH M
Sbjct: 208 PDYLTTIKHPMDLGTVKKNLASGVYSSPHEFAADVRLTFTNAMTYNPPGHDVHIM 262
>At5g46550.1 68418.m05731 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 494
Score = 50.8 bits (116), Expect = 8e-07
Identities = 24/63 (38%), Positives = 37/63 (58%)
Frame = +3
Query: 6 EAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKE 185
E P Y V+++PMDL T++ + EF DV L +NA+ YN + VH++AKE
Sbjct: 99 EIPDYFNVIQKPMDLGTVKSKLLKNVYSNADEFAADVRLTFANAMHYNPLWNEVHTIAKE 158
Query: 186 MHE 194
++E
Sbjct: 159 INE 161
>At3g01770.1 68416.m00116 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 620
Score = 50.4 bits (115), Expect = 1e-06
Identities = 20/56 (35%), Positives = 34/56 (60%)
Frame = +3
Query: 12 PGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMA 179
P Y ++K PMDL T++ + +G + +EF DV L NA+ YN ++++V+ A
Sbjct: 161 PDYFTIIKHPMDLGTVKSKLTSGTYSSPSEFSADVRLTFRNAMTYNPSDNNVYRFA 216
>At5g63330.1 68418.m07948 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 477
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/57 (40%), Positives = 32/57 (56%)
Frame = +3
Query: 12 PGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAK 182
P Y V+K PMDL TIR + G + +F DV L SN++ YN + H+MA+
Sbjct: 193 PDYFNVIKHPMDLGTIRSRLCKGEYSSPLDFAADVRLTFSNSIAYNPPGNQFHTMAQ 249
>At5g65630.1 68418.m08256 DNA-binding bromodomain-containing protein
similar to 5.9 kb fsh membrane protein [Drosophila
melanogaster] GI:157455; contains Pfam profile PF00439:
Bromodomain
Length = 590
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/57 (40%), Positives = 33/57 (57%)
Frame = +3
Query: 18 YSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEM 188
Y VVK+PMDL T++ N+D G + +F DV L NA+ YN V+ MA ++
Sbjct: 203 YHQVVKKPMDLGTVKLNLDKGFYVSPIDFATDVRLTFDNAMTYNPKGQDVYFMADKL 259
>At1g73150.1 68414.m08460 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 461
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = +3
Query: 18 YSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAK 182
Y ++K PMDL T++ + ++ EF DV L +NA++YN H V+ MA+
Sbjct: 153 YHNIIKEPMDLGTVKTRLSKSLYKSPLEFAEDVRLTFNNAMLYNPVGHDVYHMAE 207
>At5g10550.1 68418.m01221 DNA-binding bromodomain-containing protein
low similarity to kinase [Gallus gallus] GI:1370092;
contains Pfam profile PF00439: Bromodomain
Length = 678
Score = 48.4 bits (110), Expect = 4e-06
Identities = 21/57 (36%), Positives = 35/57 (61%)
Frame = +3
Query: 18 YSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEM 188
Y +V +PMDL T++ N++ G R+ +F DV L +NA+ YN V+ MA+++
Sbjct: 283 YHRIVDKPMDLGTVKMNLEKGLYRSPIDFASDVRLTFTNAMSYNPKGQDVYLMAEKL 339
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439: Bromodomain
Length = 1210
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/73 (31%), Positives = 38/73 (52%)
Frame = +3
Query: 3 EEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAK 182
E+AP Y +++ PMD T+ + +D G T F +DV L++ NA YN +++ +
Sbjct: 925 EDAPNYRSIIQIPMDTATLLQRVDTGQYLTCTPFLQDVDLIVRNAKAYNGDDYAGARIVS 984
Query: 183 EMHEEAQCQLGML 221
+E GML
Sbjct: 985 RAYELRDVVHGML 997
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 565 IIYL*CSFGEICDYRSITVFDNRTIINV 482
I+ L S+GE+ D +VFDNR++ V
Sbjct: 803 ILLLATSYGELSDMEEQSVFDNRSVYTV 830
>At5g14270.1 68418.m01669 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 688
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = +3
Query: 18 YSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEMHE 194
Y V++ PMDL T++ + +G +EF DV L SNA+ YN + V+ MA + +
Sbjct: 171 YFNVIEHPMDLGTVKNKLTSGTYSCPSEFAADVRLTFSNAMTYNPPGNDVYVMADTLRK 229
>At2g34900.2 68415.m04284 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 276
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/60 (33%), Positives = 35/60 (58%)
Frame = +3
Query: 18 YSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEMHEE 197
Y V+++PMDL TI++ +++ E DV L+ NA+ YN + V+ MA+ + E+
Sbjct: 34 YYKVIEKPMDLGTIKKKMESSEYSNVREIYADVRLVFKNAMRYNEEKEDVYVMAESLLEK 93
>At2g34900.1 68415.m04285 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 386
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/60 (33%), Positives = 35/60 (58%)
Frame = +3
Query: 18 YSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEMHEE 197
Y V+++PMDL TI++ +++ E DV L+ NA+ YN + V+ MA+ + E+
Sbjct: 144 YYKVIEKPMDLGTIKKKMESSEYSNVREIYADVRLVFKNAMRYNEEKEDVYVMAESLLEK 203
>At1g17790.1 68414.m02202 DNA-binding bromodomain-containing protein
similar to SP|P13709 Female sterile homeotic protein
(Fragile-chorion membrane protein) {Drosophila
melanogaster}; contains Pfam profile PF00439:
Bromodomain
Length = 487
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +3
Query: 18 YSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAK 182
Y +VK PMDL T++ + ++ +F DV L +NA++YN H V+ A+
Sbjct: 166 YHNIVKEPMDLGTVKTKLGKSLYKSPLDFAEDVRLTFNNAILYNPIGHDVYRFAE 220
>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
bromodomain-containing protein low similarity to
SP|P51123 Transcription initiation factor TFIID 230 kDa
subunit {Drosophila melanogaster}; contains Pfam
profiles: PF00439 bromodomain, PF00240: Ubiquitin family
Length = 1700
Score = 44.8 bits (101), Expect = 6e-05
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +3
Query: 3 EEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEH-SVHSMA 179
+EAP Y +VK PMDL+TIR + R +F+ DV + NA +YN + S+ +A
Sbjct: 1608 KEAPNYLEIVKCPMDLSTIRDKVRRMEYRDRQQFRHDVWQIKFNAHLYNDGRNLSIPPLA 1667
Query: 180 KEM 188
E+
Sbjct: 1668 DEL 1670
>At1g06230.2 68414.m00659 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 766
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +3
Query: 18 YSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMA 179
Y +++ PMDL TI+ + ++ EF DV L NA+ YN VH MA
Sbjct: 455 YYTIIEHPMDLGTIKSALMKNLYKSPREFAEDVRLTFHNAMTYNPEGQDVHLMA 508
>At1g06230.1 68414.m00658 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 766
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +3
Query: 18 YSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMA 179
Y +++ PMDL TI+ + ++ EF DV L NA+ YN VH MA
Sbjct: 455 YYTIIEHPMDLGTIKSALMKNLYKSPREFAEDVRLTFHNAMTYNPEGQDVHLMA 508
>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
[Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
Pfam domains, PF00439: Bromodomain and PF00240: Ubiquitin
family
Length = 1919
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +3
Query: 3 EEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYN 149
+EAP Y +V+ PMDL+TIR + R +F+ DV + NA +YN
Sbjct: 1831 KEAPDYLDIVENPMDLSTIRDKVRKIEYRNREQFRHDVWQIKYNAHLYN 1879
>At3g52280.1 68416.m05746 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 369
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +3
Query: 18 YSVVVKRPMDLTTIRRNI---DNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEM 188
Y V+ +PMD +TI+ + D + + D+ L+ NA+ YN V+SMAK++
Sbjct: 128 YFEVIDKPMDFSTIKNQMEAKDGTGYKHVMQIYADMRLVFENAMNYNEETSDVYSMAKKL 187
Query: 189 HEE 197
E+
Sbjct: 188 LEK 190
>At2g44430.1 68415.m05525 DNA-binding bromodomain-containing protein
contains Pfam domains, Pfam PF00439: Bromodomain and
PF00249: Myb-like DNA-binding domain
Length = 646
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +3
Query: 3 EEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAE-FQRDVLLMLSNALIYNSTEHSVHSMA 179
+EA Y +VK+ +D+ TI+R + G+ +++ F RD+ L+ +NA+++ S A
Sbjct: 335 QEAKDYKSMVKQHLDIETIQRKLKQGSYDSSSLIFYRDLQLLFTNAIVFFPLSSSESMAA 394
Query: 180 KEM 188
E+
Sbjct: 395 HEL 397
>At2g42150.1 68415.m05217 DNA-binding bromodomain-containing protein
contains Pfam domains, PF00439: Bromodomain and PF00249:
Myb-like DNA-binding domain
Length = 631
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/71 (23%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +3
Query: 3 EEAPGYSVVVKRPMDLTTIRRNIDNGNIRT-TAEFQRDVLLMLSNALIYNSTEHSVHSMA 179
+E Y +++ +D IR+ ++ G ++ F RD+LL+++NA ++ S A
Sbjct: 299 QETIEYGTIIREHVDFEIIRKRVEGGLYKSWRINFFRDLLLLVNNARVFYHRGSSEFKFA 358
Query: 180 KEMHEEAQCQL 212
+++H+ + Q+
Sbjct: 359 EQLHQLVKKQM 369
>At3g60110.1 68416.m06712 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 438
Score = 37.5 bits (83), Expect = 0.008
Identities = 15/63 (23%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = +3
Query: 3 EEAPGYSVVVKRPMDLTTIRRNIDNGN-IRTTAEFQRDVLLMLSNALIYNSTEHSVHSMA 179
++ Y ++++ +D+ TI + ++ G+ + ++ F RD+ L+ +NA+++ T S A
Sbjct: 123 QDTKDYKRLIRQHLDMKTIEKKMEKGSYVSSSLSFYRDLKLLFTNAIVFFPTSSSESIAA 182
Query: 180 KEM 188
+E+
Sbjct: 183 QEL 185
>At3g54610.1 68416.m06042 histone acetyltransferase (GCN5) nearly
identical to histone acetyltransferase GCN5 [Arabidopsis
thaliana] GI:13591696; contains Pfam profiles PF00583:
acetyltransferase, GNAT family, PF00439: Bromodomain
Length = 568
Score = 35.1 bits (77), Expect = 0.045
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +3
Query: 6 EAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAE-FQRDVLLMLSNALIYNSTEHSVHSMAK 182
+ P Y ++K P+DL I + +++ T + F D M +N YNS + + A
Sbjct: 488 DVPDYYDIIKDPIDLKVIAKRVESEQYYVTLDMFVADARRMFNNCRTYNSPDTIYYKCAT 547
Query: 183 --EMHEEAQCQLGM 218
E H ++ Q G+
Sbjct: 548 RLETHFHSKVQAGL 561
>At1g58025.1 68414.m06576 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487; contains
prenyl group binding site (CAAX box) Prosite:PS00294
Length = 769
Score = 32.3 bits (70), Expect = 0.32
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +3
Query: 12 PGYSVVVKRPMDLTTIRRNIDNGN-IRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEM 188
P Y ++K PMD TI N + GN + + +DV + +N YN + + K +
Sbjct: 247 PDYFDIIKTPMDFGTICNNFEKGNKYMNSEDVYKDVNYIWNNCSKYNKKGDYIVDLMKRV 306
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +3
Query: 30 VKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEMH 191
V ++L I ++ E DV LML A+ + H V S AK++H
Sbjct: 1942 VNNLLELREIDHRVERLEYAGVMELASDVQLMLRGAMQFYGFSHEVRSEAKKVH 1995
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +3
Query: 30 VKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEMH 191
V ++L I ++ E DV LML A+ + H V S AK++H
Sbjct: 1941 VNNLLELREIDHRVERLEYAGVMELASDVQLMLRGAMQFYGFSHEVRSEAKKVH 1994
>At1g64770.1 68414.m07344 expressed protein
Length = 348
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3
Query: 94 VVLMFPLSMFLRIVVRSMGRFTTTLYPGASS 2
+V ++P+SM +VV++ GR TL PG S
Sbjct: 153 IVSLYPVSMATALVVKNNGRKPVTLKPGIMS 183
>At1g28120.1 68414.m03445 expressed protein
Length = 306
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Frame = +3
Query: 3 EEAPGYSVVVKRPMD------LTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHS 164
EE+ Y +V R D + R + G+IRT A+F + LSNA + + S
Sbjct: 157 EESISYDELVNRSRDQSVSDYIVMFFRFVTAGDIRTRADFFEPFITGLSNATVDQFCKSS 216
Query: 165 VHSMAKE 185
V M +E
Sbjct: 217 VEPMGEE 223
>At3g44750.1 68416.m04817 histone deacetylase, putative (HD2A)
contains Pfam domain, PF00096: Zinc finger, C2H2 type;
identical to cDNA putative histone deacetylase (HD2A)
GI:11066134
Length = 245
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 47 PHHDPQEHRQRKHQDDGRVPARRAPDAVQCPHLQQHGAQRTLDGEGD 187
P+ +PQ + + + +++ VPA A AV P + + +D E D
Sbjct: 95 PNIEPQGYSEEEEEEEEEVPAGNAAKAVAKPKAKPAEVKPAVDDEED 141
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,284,361
Number of Sequences: 28952
Number of extensions: 210840
Number of successful extensions: 599
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -