Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0275
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz...    48   1e-06
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   2.5  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   4.4  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    25   7.8  

>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 45/181 (24%), Positives = 71/181 (39%), Gaps = 9/181 (4%)
 Frame = +1

Query: 148 DVLTKTRIGMTVNALRKSSKDDEVISLCKTLIKNWK---------KFLSTPNTTXXXXXX 300
           ++L +TR+G+ V  LR S  +++V    + ++K WK         K  +T ++T      
Sbjct: 41  ELLKETRLGLVVGKLR-SHPNEKVGEQAREIVKKWKADVSKGRPLKTTTTTSSTPSKHAD 99

Query: 301 XXXXXXXXXXXXXXXXXXXLPASFPPQSNTTDAVRLKCRELLTQALKAAGETSNACGSPX 480
                                +     + T D +R  C  L+  AL    + S++     
Sbjct: 100 VGSQAQKQVQKQSSSGQRTFKSDNVNVNVTDDKIRNNCIGLMYNALVIDSDESSSLIIAK 159

Query: 481 XXXXXXXXCIYAEFKNTDMRYKNRVRSRVANLKDPKNPTLRTNFFNGVISASRLAKMTPE 660
                      A  K T   Y+NR+RS   NLKD  NP LR +     I+  RL+ MT  
Sbjct: 160 AKEIDAQVLARAAGK-TGSEYRNRMRSLYMNLKDKNNPKLRASVLRNEITPQRLSTMTSA 218

Query: 661 E 663
           E
Sbjct: 219 E 219


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 202  SKDDEVISLCKTLIKNWKKFLSTPN 276
            ++D E +S+    +K+ K FLSTPN
Sbjct: 981  NEDREALSVISEFLKDLKGFLSTPN 1005


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +1

Query: 13  IIKMSVEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTK--TRIGMTVN 186
           +  ++ EEDV   QKKLT M S     Q           T+   LD   K   +I   V+
Sbjct: 173 VTTLTSEEDVSYFQKKLTNMESNFSAKQSEAYDLSRQLLTVTEKLDKKEKDYEKIKEDVS 232

Query: 187 ALRKSSKDDE 216
           +++ S  +++
Sbjct: 233 SIKASLAEEQ 242


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 686 FFHFITCHSSGVILAKRDAEMTPLKKFVRNVGFLGS 579
           + HFITC +  + L++ D+    L+ F +++   GS
Sbjct: 80  WMHFITCQALNITLSETDSSKYYLEGFKKDLEEEGS 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.127    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,190,930
Number of Sequences: 5004
Number of extensions: 35252
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)