Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0275
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,608...    44   1e-04
06_03_0640 - 23059473-23060489,23060592-23060651,23063163-230632...    42   5e-04
10_02_0100 + 5296783-5297568                                           38   0.007
10_05_0058 + 8662996-8663826                                           36   0.030
07_01_0873 - 7257016-7257957,7260083-7260262                           34   0.092
10_02_0099 - 5295513-5296400                                           34   0.12 

>02_02_0011 +
           6083431-6085541,6086659-6086779,6087188-6087247,
           6087354-6088391,6089733-6089925,6090326-6090375,
           6090470-6090744,6091114-6091180,6091189-6091278,
           6091301-6091381,6091435-6091593
          Length = 1414

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 21/52 (40%), Positives = 29/52 (55%)
 Frame = +1

Query: 508 IYAEFKNTDMRYKNRVRSRVANLKDPKNPTLRTNFFNGVISASRLAKMTPEE 663
           ++  F   + +YK + RS + NLKD  NP LR    +G I+  RL  MT EE
Sbjct: 355 LFKLFGGVNKKYKEKGRSLLFNLKDKSNPELRERVLSGDITPDRLCSMTAEE 406


>06_03_0640 -
           23059473-23060489,23060592-23060651,23063163-23063283,
           23063476-23065496
          Length = 1072

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 20/42 (47%), Positives = 25/42 (59%)
 Frame = +1

Query: 538 RYKNRVRSRVANLKDPKNPTLRTNFFNGVISASRLAKMTPEE 663
           +YK + RS + NLKD  NP LR    +G I+  RL  MT EE
Sbjct: 341 KYKEKGRSLLFNLKDKSNPVLRGRVLSGDITPKRLCSMTTEE 382


>10_02_0100 + 5296783-5297568
          Length = 261

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
 Frame = +1

Query: 1   DLDKIIKMSVEEDVMKIQKKLTKMTSEDG------TGQXXXXXXXXXXQTMAINLDVLTK 162
           +L +  K S+ E+V +I+ KL  +  EDG      + +          ++  +  + L  
Sbjct: 46  ELRRAKKSSMAEEVERIKGKL--VGGEDGGRPSSDSSEETVVELLRALRSTPMTFETLEA 103

Query: 163 TRIGMTVNALRKSSKDDEVISLCKTLIKNWK 255
           +RIG T++ LR+    ++V  L   L KNWK
Sbjct: 104 SRIGKTISGLRRKHSSEKVRGLAAALYKNWK 134


>10_05_0058 + 8662996-8663826
          Length = 276

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
 Frame = +1

Query: 31  EEDVMKIQKKLTKMTSEDG-------TGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNA 189
           E++V KI+ KL  +  EDG       +            Q + +  + L  ++IG  ++ 
Sbjct: 76  EDEVEKIKTKLVAVVGEDGGNPRSDSSSSEAVVELLRALQAVPMTFETLEASKIGKAISG 135

Query: 190 LRKSSKDDEVISLCKTLIKNWK 255
           LRK S  ++V  L   L K+WK
Sbjct: 136 LRKHS-SEQVRDLAAALYKSWK 156


>07_01_0873 - 7257016-7257957,7260083-7260262
          Length = 373

 Score = 34.3 bits (75), Expect = 0.092
 Identities = 21/71 (29%), Positives = 29/71 (40%)
 Frame = +1

Query: 451 ETSNACGSPXXXXXXXXXCIYAEFKNTDMRYKNRVRSRVANLKDPKNPTLRTNFFNGVIS 630
           E   AC  P          ++ +  N +   K R RS + NLKD  N   R     G + 
Sbjct: 230 EEVKAC-DPFRIAVMVECALFQKLGNFNGPNKQRYRSLMFNLKDDHNTDFRRRVLLGQVQ 288

Query: 631 ASRLAKMTPEE 663
             R+A +TP E
Sbjct: 289 PERIADLTPTE 299


>10_02_0099 - 5295513-5296400
          Length = 295

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
 Frame = +1

Query: 37  DVMKIQKKLTKMTSEDGTG-----------QXXXXXXXXXXQTMAINLDVLTKTRIGMTV 183
           +V +I+ KL  +  EDG+G           +          Q + +  + L  ++I  T+
Sbjct: 76  EVERIKVKLVAVGGEDGSGGGGGGTSADSSEDAVVDLLRDLQAVPMTFETLEASKISKTI 135

Query: 184 NALRKSSKDDEVISLCKTLIKNWK 255
           + LRK S  ++V  L   L K+WK
Sbjct: 136 SGLRKHSSSEKVRRLAAALYKSWK 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.127    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,181,687
Number of Sequences: 37544
Number of extensions: 199897
Number of successful extensions: 465
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)