Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0275
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39905| Best HMM Match : No HMM Matches (HMM E-Value=.)              94   8e-20
SB_49281| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   4e-06
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.018
SB_29524| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_25778| Best HMM Match : COX17 (HMM E-Value=1.1)                     28   8.1  

>SB_39905| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 242

 Score = 94.3 bits (224), Expect = 8e-20
 Identities = 67/188 (35%), Positives = 90/188 (47%), Gaps = 12/188 (6%)
 Frame = +1

Query: 160 KTRIGMTVNALRKSSKDDEVISLCKTLIKNWKKFL---STPNTTXXXXXXXXXXXXXXXX 330
           KTRIGM+VN +RK S +  V +L K+LIK WKK L   S  +                  
Sbjct: 16  KTRIGMSVNTMRKKSNNSNVQTLAKSLIKLWKKLLPEKSGSDKKADNGKASSEKSSRSTS 75

Query: 331 XXXXXXXXXLPASFPPQSN---------TTDAVRLKCRELLTQALKAAGETSNACGSPXX 483
                      A   P+ N         T ++VR KCRE++  +L+  GE          
Sbjct: 76  PALSTKSDTSDAPTTPKDNKPISFPNTITDESVRGKCREMIVNSLQVQGE---------- 125

Query: 484 XXXXXXXCIYAEFKNTDMRYKNRVRSRVANLKDPKNPTLRTNFFNGVISASRLAKMTPEE 663
                   I+ EFK+T+++YK R+RSRV NL+DPKNP L+     G IS +RLA MT EE
Sbjct: 126 ----FEAVIFEEFKDTNVKYKQRIRSRVNNLRDPKNPMLKVRVLGGEISPARLAVMTSEE 181

Query: 664 WQVMKWKK 687
               + KK
Sbjct: 182 MASDEMKK 189


>SB_49281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 962

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
 Frame = +1

Query: 379 QSNTTDAVRLKCRELLTQALKAAGETSNACGSPXXXXXXXXXCIYAEFKNTDMRYKNRVR 558
           + +  + V+   RE+LT   K + +                  +Y  F +   RYKN+ R
Sbjct: 178 EKSIRENVKRHLREILTSRQKESKDLHLPSDEVIKLSDNIEEDLYKLFGDAGHRYKNKYR 237

Query: 559 SRVANLKDPKNPTLRTNFFNGVISASRLAKMTPEE---WQVMKWKK 687
           S   NLKD +N  L  +  +G +S  RL  MTPE+    ++ +W++
Sbjct: 238 SLAFNLKDTRNKVLFHHVLSGEVSTDRLVAMTPEQLASQELARWRE 283


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 157  TKTRIGMTVNALRKSSKDDEVISLCKTLIKNWKKFL 264
            T TRIG T+N LRK + ++ +    K L+K W+  +
Sbjct: 2041 TTTRIGKTINLLRKKTNNESLAKRAKKLVKKWQSLV 2076


>SB_29524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 421

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 535 MRYKNRVRSRVANLKDPKNPTLRTNFFNGVISASRLAKMTPEEWQVMKWKK 687
           +R K R R  + +++ PK   + T    GV  A +L       WQ  KW K
Sbjct: 242 VRRKYRSRKEI-DIEKPKVTDVYTAHMGGVDRADQLRSFYSSGWQSRKWYK 291


>SB_25778| Best HMM Match : COX17 (HMM E-Value=1.1)
          Length = 567

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 535 MRYKNRVRSRVANLKDPKNPTLRTNFFNGVISASRLAKMTPEEWQVMKWKK 687
           +R K R R  + +++ PK   + T    GV  A +L       WQ  KW K
Sbjct: 391 VRRKYRSREEI-DIEKPKVTDVYTAHMGGVDRADQLRSFYSSGWQSRKWYK 440


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.127    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,755,001
Number of Sequences: 59808
Number of extensions: 251892
Number of successful extensions: 518
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)