Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0275
(687 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X53670-1|CAA37710.1| 313|Drosophila melanogaster protein ( Dros... 124 2e-28
L26091-1|AAA92864.2| 313|Drosophila melanogaster transcription ... 124 2e-28
AY051843-1|AAK93267.1| 313|Drosophila melanogaster LD34766p pro... 124 2e-28
AE014134-2559|AAF53436.1| 313|Drosophila melanogaster CG3710-PA... 124 2e-28
BT023150-1|AAY55566.1| 162|Drosophila melanogaster IP09061p pro... 90 2e-18
BT022128-1|AAY51523.1| 162|Drosophila melanogaster IP08861p pro... 90 2e-18
AE014298-2184|AAF48482.2| 162|Drosophila melanogaster CG8117-PA... 90 2e-18
AE014297-1515|AAF54807.1| 2016|Drosophila melanogaster CG6525-PA... 36 0.052
BT003775-1|AAO41456.1| 643|Drosophila melanogaster RE20724p pro... 35 0.12
AE014297-3300|AAF56117.1| 643|Drosophila melanogaster CG6755-PA... 35 0.12
BT015280-1|AAT94509.1| 623|Drosophila melanogaster LD05389p pro... 33 0.37
AE014135-139|AAF59315.2| 1483|Drosophila melanogaster CG1793-PB,... 33 0.37
AE014135-138|AAF59314.2| 1483|Drosophila melanogaster CG1793-PA,... 33 0.37
AY061353-1|AAL28901.1| 687|Drosophila melanogaster LD28117p pro... 30 3.4
AE014298-2173|AAF48473.2| 687|Drosophila melanogaster CG9213-PA... 30 3.4
>X53670-1|CAA37710.1| 313|Drosophila melanogaster protein (
Drosophila gene forRNA polymerase II elongation factor
DmS-II. ).
Length = 313
Score = 124 bits (298), Expect = 2e-28
Identities = 60/104 (57%), Positives = 69/104 (66%)
Frame = +1
Query: 376 PQSNTTDAVRLKCRELLTQALKAAGETSNACGSPXXXXXXXXXCIYAEFKNTDMRYKNRV 555
P TDAVR+KCRE+L ALK GE CG P IY+EF NTDM+YKNR+
Sbjct: 145 PSGGMTDAVRIKCREMLATALKI-GEVPEGCGEPEEMAAELEDAIYSEFNNTDMKYKNRI 203
Query: 556 RSRVANLKDPKNPTLRTNFFNGVISASRLAKMTPEEWQVMKWKK 687
RSRVANLKDPKNP LR NF G ++A +LAKMTPEE + KK
Sbjct: 204 RSRVANLKDPKNPGLRGNFMCGAVTAKQLAKMTPEEMASDEMKK 247
Score = 118 bits (285), Expect = 6e-27
Identities = 59/87 (67%), Positives = 69/87 (79%)
Frame = +1
Query: 22 MSVEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRKS 201
MSVEE+V +IQKK++KM S DGTGQ QT+ INLD+LTKTRIGMTVN LRKS
Sbjct: 1 MSVEEEVFRIQKKMSKMAS-DGTGQDQALDLLKALQTLNINLDILTKTRIGMTVNELRKS 59
Query: 202 SKDDEVISLCKTLIKNWKKFLSTPNTT 282
SKDDEVI+L KTLIKNWK+FL++P T
Sbjct: 60 SKDDEVIALAKTLIKNWKRFLASPAPT 86
>L26091-1|AAA92864.2| 313|Drosophila melanogaster transcription
elongation factor protein.
Length = 313
Score = 124 bits (298), Expect = 2e-28
Identities = 60/104 (57%), Positives = 69/104 (66%)
Frame = +1
Query: 376 PQSNTTDAVRLKCRELLTQALKAAGETSNACGSPXXXXXXXXXCIYAEFKNTDMRYKNRV 555
P TDAVR+KCRE+L ALK GE CG P IY+EF NTDM+YKNR+
Sbjct: 145 PSGGMTDAVRIKCREMLATALKI-GEVPEGCGEPEEMAAELEDAIYSEFNNTDMKYKNRI 203
Query: 556 RSRVANLKDPKNPTLRTNFFNGVISASRLAKMTPEEWQVMKWKK 687
RSRVANLKDPKNP LR NF G ++A +LAKMTPEE + KK
Sbjct: 204 RSRVANLKDPKNPGLRGNFMCGAVTAKQLAKMTPEEMASDEMKK 247
Score = 118 bits (285), Expect = 6e-27
Identities = 59/87 (67%), Positives = 69/87 (79%)
Frame = +1
Query: 22 MSVEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRKS 201
MSVEE+V +IQKK++KM S DGTGQ QT+ INLD+LTKTRIGMTVN LRKS
Sbjct: 1 MSVEEEVFRIQKKMSKMAS-DGTGQDQALDLLKALQTLNINLDILTKTRIGMTVNELRKS 59
Query: 202 SKDDEVISLCKTLIKNWKKFLSTPNTT 282
SKDDEVI+L KTLIKNWK+FL++P T
Sbjct: 60 SKDDEVIALAKTLIKNWKRFLASPAPT 86
>AY051843-1|AAK93267.1| 313|Drosophila melanogaster LD34766p
protein.
Length = 313
Score = 124 bits (298), Expect = 2e-28
Identities = 60/104 (57%), Positives = 69/104 (66%)
Frame = +1
Query: 376 PQSNTTDAVRLKCRELLTQALKAAGETSNACGSPXXXXXXXXXCIYAEFKNTDMRYKNRV 555
P TDAVR+KCRE+L ALK GE CG P IY+EF NTDM+YKNR+
Sbjct: 145 PSGGMTDAVRIKCREMLATALKI-GEVPEGCGEPEEMAAELEDAIYSEFNNTDMKYKNRI 203
Query: 556 RSRVANLKDPKNPTLRTNFFNGVISASRLAKMTPEEWQVMKWKK 687
RSRVANLKDPKNP LR NF G ++A +LAKMTPEE + KK
Sbjct: 204 RSRVANLKDPKNPGLRGNFMCGAVTAKQLAKMTPEEMASDEMKK 247
Score = 118 bits (285), Expect = 6e-27
Identities = 59/87 (67%), Positives = 69/87 (79%)
Frame = +1
Query: 22 MSVEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRKS 201
MSVEE+V +IQKK++KM S DGTGQ QT+ INLD+LTKTRIGMTVN LRKS
Sbjct: 1 MSVEEEVFRIQKKMSKMAS-DGTGQDQALDLLKALQTLNINLDILTKTRIGMTVNELRKS 59
Query: 202 SKDDEVISLCKTLIKNWKKFLSTPNTT 282
SKDDEVI+L KTLIKNWK+FL++P T
Sbjct: 60 SKDDEVIALAKTLIKNWKRFLASPAPT 86
>AE014134-2559|AAF53436.1| 313|Drosophila melanogaster CG3710-PA
protein.
Length = 313
Score = 124 bits (298), Expect = 2e-28
Identities = 60/104 (57%), Positives = 69/104 (66%)
Frame = +1
Query: 376 PQSNTTDAVRLKCRELLTQALKAAGETSNACGSPXXXXXXXXXCIYAEFKNTDMRYKNRV 555
P TDAVR+KCRE+L ALK GE CG P IY+EF NTDM+YKNR+
Sbjct: 145 PSGGMTDAVRIKCREMLATALKI-GEVPEGCGEPEEMAAELEDAIYSEFNNTDMKYKNRI 203
Query: 556 RSRVANLKDPKNPTLRTNFFNGVISASRLAKMTPEEWQVMKWKK 687
RSRVANLKDPKNP LR NF G ++A +LAKMTPEE + KK
Sbjct: 204 RSRVANLKDPKNPGLRGNFMCGAVTAKQLAKMTPEEMASDEMKK 247
Score = 118 bits (285), Expect = 6e-27
Identities = 59/87 (67%), Positives = 69/87 (79%)
Frame = +1
Query: 22 MSVEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTKTRIGMTVNALRKS 201
MSVEE+V +IQKK++KM S DGTGQ QT+ INLD+LTKTRIGMTVN LRKS
Sbjct: 1 MSVEEEVFRIQKKMSKMAS-DGTGQDQALDLLKALQTLNINLDILTKTRIGMTVNELRKS 59
Query: 202 SKDDEVISLCKTLIKNWKKFLSTPNTT 282
SKDDEVI+L KTLIKNWK+FL++P T
Sbjct: 60 SKDDEVIALAKTLIKNWKRFLASPAPT 86
>BT023150-1|AAY55566.1| 162|Drosophila melanogaster IP09061p
protein.
Length = 162
Score = 90.2 bits (214), Expect = 2e-18
Identities = 42/88 (47%), Positives = 54/88 (61%)
Frame = +1
Query: 400 VRLKCRELLTQALKAAGETSNACGSPXXXXXXXXXCIYAEFKNTDMRYKNRVRSRVANLK 579
+R+KCRE+L ALK+ G CG P IY + ++YKNR+RSR+ANL+
Sbjct: 5 IRIKCREMLATALKS-GNMPPGCGDPDDMAAKLEDAIYGDLNGCKVKYKNRIRSRLANLR 63
Query: 580 DPKNPTLRTNFFNGVISASRLAKMTPEE 663
DPKNP LR F G I+ L+KMTPEE
Sbjct: 64 DPKNPELRQKFLLGQITPEELSKMTPEE 91
>BT022128-1|AAY51523.1| 162|Drosophila melanogaster IP08861p
protein.
Length = 162
Score = 90.2 bits (214), Expect = 2e-18
Identities = 42/88 (47%), Positives = 54/88 (61%)
Frame = +1
Query: 400 VRLKCRELLTQALKAAGETSNACGSPXXXXXXXXXCIYAEFKNTDMRYKNRVRSRVANLK 579
+R+KCRE+L ALK+ G CG P IY + ++YKNR+RSR+ANL+
Sbjct: 5 IRIKCREMLATALKS-GNMPPGCGDPDDMAAKLEDAIYGDLNGCKVKYKNRIRSRLANLR 63
Query: 580 DPKNPTLRTNFFNGVISASRLAKMTPEE 663
DPKNP LR F G I+ L+KMTPEE
Sbjct: 64 DPKNPELRQKFLLGQITPEELSKMTPEE 91
>AE014298-2184|AAF48482.2| 162|Drosophila melanogaster CG8117-PA
protein.
Length = 162
Score = 90.2 bits (214), Expect = 2e-18
Identities = 42/88 (47%), Positives = 54/88 (61%)
Frame = +1
Query: 400 VRLKCRELLTQALKAAGETSNACGSPXXXXXXXXXCIYAEFKNTDMRYKNRVRSRVANLK 579
+R+KCRE+L ALK+ G CG P IY + ++YKNR+RSR+ANL+
Sbjct: 5 IRIKCREMLATALKS-GNMPPGCGDPDDMAAKLEDAIYGDLNGCKVKYKNRIRSRLANLR 63
Query: 580 DPKNPTLRTNFFNGVISASRLAKMTPEE 663
DPKNP LR F G I+ L+KMTPEE
Sbjct: 64 DPKNPELRQKFLLGQITPEELSKMTPEE 91
>AE014297-1515|AAF54807.1| 2016|Drosophila melanogaster CG6525-PA
protein.
Length = 2016
Score = 35.9 bits (79), Expect = 0.052
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = +1
Query: 523 KNTDMRYKNRVRSRVANLKDPKNPTLRTNFFNGVISASRLAKMTPEE---WQVMKWKK 687
++ +YK + RS + N+KD KN TL + +L +MTPE+ ++ KW++
Sbjct: 1330 RDVGAKYKAKYRSLMFNIKDRKNRTLFEKICAKQVEPRQLVRMTPEQLASQELAKWRE 1387
>BT003775-1|AAO41456.1| 643|Drosophila melanogaster RE20724p
protein.
Length = 643
Score = 34.7 bits (76), Expect = 0.12
Identities = 20/45 (44%), Positives = 26/45 (57%)
Frame = +1
Query: 133 MAINLDVLTKTRIGMTVNALRKSSKDDEVISLCKTLIKNWKKFLS 267
+ I + L +T IG TVNALRK S EV KTL+ WK ++
Sbjct: 38 LPIKFEHLQETGIGKTVNALRKIS--GEVGVAAKTLVTKWKAMVA 80
>AE014297-3300|AAF56117.1| 643|Drosophila melanogaster CG6755-PA,
isoform A protein.
Length = 643
Score = 34.7 bits (76), Expect = 0.12
Identities = 20/45 (44%), Positives = 26/45 (57%)
Frame = +1
Query: 133 MAINLDVLTKTRIGMTVNALRKSSKDDEVISLCKTLIKNWKKFLS 267
+ I + L +T IG TVNALRK S EV KTL+ WK ++
Sbjct: 38 LPIKFEHLQETGIGKTVNALRKIS--GEVGVAAKTLVTKWKAMVA 80
>BT015280-1|AAT94509.1| 623|Drosophila melanogaster LD05389p
protein.
Length = 623
Score = 33.1 bits (72), Expect = 0.37
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +1
Query: 139 INLDVLTKTRIGMTVNALRKSSKDDEVISLCKTLIKNWKKFLSTPNT 279
I + L TR+ +N LR+ +K++ + K+L+K W++ + T
Sbjct: 41 ITKEQLEATRLAKYINQLRRRTKNEHLARRAKSLLKKWREMVGIQQT 87
>AE014135-139|AAF59315.2| 1483|Drosophila melanogaster CG1793-PB,
isoform B protein.
Length = 1483
Score = 33.1 bits (72), Expect = 0.37
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +1
Query: 139 INLDVLTKTRIGMTVNALRKSSKDDEVISLCKTLIKNWKKFLSTPNT 279
I + L TR+ +N LR+ +K++ + K+L+K W++ + T
Sbjct: 41 ITKEQLEATRLAKYINQLRRRTKNEHLARRAKSLLKKWREMVGIQQT 87
>AE014135-138|AAF59314.2| 1483|Drosophila melanogaster CG1793-PA,
isoform A protein.
Length = 1483
Score = 33.1 bits (72), Expect = 0.37
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +1
Query: 139 INLDVLTKTRIGMTVNALRKSSKDDEVISLCKTLIKNWKKFLSTPNT 279
I + L TR+ +N LR+ +K++ + K+L+K W++ + T
Sbjct: 41 ITKEQLEATRLAKYINQLRRRTKNEHLARRAKSLLKKWREMVGIQQT 87
>AY061353-1|AAL28901.1| 687|Drosophila melanogaster LD28117p
protein.
Length = 687
Score = 29.9 bits (64), Expect = 3.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 184 NALRKSSKDDEVISLCKTLIKNWKKFLSTPN 276
NA RK K+ I K+ +NWKKF T N
Sbjct: 657 NAWRKPRKEANPIGKVKSFAENWKKFDCTQN 687
>AE014298-2173|AAF48473.2| 687|Drosophila melanogaster CG9213-PA
protein.
Length = 687
Score = 29.9 bits (64), Expect = 3.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 184 NALRKSSKDDEVISLCKTLIKNWKKFLSTPN 276
NA RK K+ I K+ +NWKKF T N
Sbjct: 657 NAWRKPRKEANPIGKVKSFAENWKKFDCTQN 687
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.314 0.127 0.364
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,900,226
Number of Sequences: 53049
Number of extensions: 366288
Number of successful extensions: 939
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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