Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0275
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54216-1|CAA90943.1|  308|Caenorhabditis elegans Hypothetical pr...    68   7e-12
AY037802-1|AAK94767.1|  669|Caenorhabditis elegans GLY-2 protein.      28   5.4  
AY037800-1|AAK94765.1|  661|Caenorhabditis elegans GLY-2 protein.      28   5.4  
AL132860-14|CAB60497.1|  619|Caenorhabditis elegans Hypothetical...    28   5.4  
AF154122-1|AAF74523.1|  669|Caenorhabditis elegans N-acetylgluco...    28   5.4  
AC006625-9|AAK68273.1|  669|Caenorhabditis elegans Glycosylation...    28   5.4  
AY241927-1|AAO85276.1|  330|Caenorhabditis elegans beta-1,3-gala...    28   7.2  
AC024746-16|AAF60408.1|  330|Caenorhabditis elegans Squashed vul...    28   7.2  

>Z54216-1|CAA90943.1|  308|Caenorhabditis elegans Hypothetical
           protein T24H10.1 protein.
          Length = 308

 Score = 67.7 bits (158), Expect = 7e-12
 Identities = 38/100 (38%), Positives = 51/100 (51%)
 Frame = +1

Query: 364 ASFPPQSNTTDAVRLKCRELLTQALKAAGETSNACGSPXXXXXXXXXCIYAEFKNTDMRY 543
           ASFPP+    D  RLK  +LL  AL+  G+       P          +Y+  ++T+  Y
Sbjct: 136 ASFPPKHLENDETRLKSAQLLLSALRF-GDMPQGTLDPEELAVQIEEKLYSVHRDTNKSY 194

Query: 544 KNRVRSRVANLKDPKNPTLRTNFFNGVISASRLAKMTPEE 663
              VRSR+ NL+D KN  LR N   GV+ A + A MT EE
Sbjct: 195 SAAVRSRIFNLRDKKNLALRENVLTGVVRAEKFATMTSEE 234



 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 16/39 (41%), Positives = 26/39 (66%)
 Frame = +1

Query: 139 INLDVLTKTRIGMTVNALRKSSKDDEVISLCKTLIKNWK 255
           ++++++ KT IG+ VN +RK   DD V    K +IK+WK
Sbjct: 40  MSIEIIQKTNIGIKVNMMRKKVTDDAVAKRAKNIIKDWK 78


>AY037802-1|AAK94767.1|  669|Caenorhabditis elegans GLY-2 protein.
          Length = 669

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
 Frame = -2

Query: 674 ITCHSSGVILAKRDAEMTPLKKFVRNVGFLGSFKLATL--DLTLF 546
           +T HS+   L  +D+ ++ + K V+N GFL S +++ L  ++T+F
Sbjct: 397 VTVHSTVADLDLKDSNISSIFKKVQNHGFLNSEEISQLLDNITIF 441


>AY037800-1|AAK94765.1|  661|Caenorhabditis elegans GLY-2 protein.
          Length = 661

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
 Frame = -2

Query: 674 ITCHSSGVILAKRDAEMTPLKKFVRNVGFLGSFKLATL--DLTLF 546
           +T HS+   L  +D+ ++ + K V+N GFL S +++ L  ++T+F
Sbjct: 389 VTVHSTVADLDLKDSNISSIFKKVQNHGFLNSEEISQLLDNITIF 433


>AL132860-14|CAB60497.1|  619|Caenorhabditis elegans Hypothetical
           protein Y56A3A.16 protein.
          Length = 619

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 180 SHSYSCFR*DVQVDSHCLKC 121
           SHS  C R DV  D+HC KC
Sbjct: 554 SHSPKCPRRDVPRDTHCPKC 573


>AF154122-1|AAF74523.1|  669|Caenorhabditis elegans
           N-acetylglucosaminyltransferase V protein.
          Length = 669

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
 Frame = -2

Query: 674 ITCHSSGVILAKRDAEMTPLKKFVRNVGFLGSFKLATL--DLTLF 546
           +T HS+   L  +D+ ++ + K V+N GFL S +++ L  ++T+F
Sbjct: 397 VTVHSTVADLDLKDSNISSIFKKVQNHGFLNSEEISQLLDNITIF 441


>AC006625-9|AAK68273.1|  669|Caenorhabditis elegans Glycosylation
           related protein 2 protein.
          Length = 669

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
 Frame = -2

Query: 674 ITCHSSGVILAKRDAEMTPLKKFVRNVGFLGSFKLATL--DLTLF 546
           +T HS+   L  +D+ ++ + K V+N GFL S +++ L  ++T+F
Sbjct: 397 VTVHSTVADLDLKDSNISSIFKKVQNHGFLNSEEISQLLDNITIF 441


>AY241927-1|AAO85276.1|  330|Caenorhabditis elegans
           beta-1,3-galactosyltransferase protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +1

Query: 520 FKNTDMRYKNRVRSRVANLKDPKNPTLRTNFFNGVISASRLAKMTPEEWQV 672
           F  TD+    R+   + NLK  ++P L   F +G     R  K    EW +
Sbjct: 154 FLKTDIDSFVRITPLIINLKQIQDPMLYWGFLDGRAKPFRKGKWKEPEWNL 204


>AC024746-16|AAF60408.1|  330|Caenorhabditis elegans Squashed vulva
           protein 2 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +1

Query: 520 FKNTDMRYKNRVRSRVANLKDPKNPTLRTNFFNGVISASRLAKMTPEEWQV 672
           F  TD+    R+   + NLK  ++P L   F +G     R  K    EW +
Sbjct: 154 FLKTDIDSFVRITPLIINLKQIQDPMLYWGFLDGRAKPFRKGKWKEPEWNL 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.314    0.127    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,068,518
Number of Sequences: 27780
Number of extensions: 196663
Number of successful extensions: 516
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)