Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0274
         (672 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia nu...    92   1e-17
UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    63   5e-09
UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein F2...    50   5e-05
UniRef50_Q2U9U9 Cluster: Predicted protein; n=1; Aspergillus ory...    34   2.7  
UniRef50_A6G028 Cluster: Putative uncharacterized protein; n=1; ...    34   3.6  
UniRef50_Q0YLZ4 Cluster: Polysulphide reductase, NrfD; n=4; Bact...    33   4.8  
UniRef50_Q60GS8 Cluster: Tachykinin receptor; n=1; Ciona intesti...    33   4.8  
UniRef50_Q2GEF5 Cluster: Putative CDP-diacylglycerol--serine O-p...    33   6.3  
UniRef50_Q10126 Cluster: Uncharacterized protein F52C9.6; n=7; C...    33   8.3  

>UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia
           nubilalis|Rep: Reverse transcriptase - Ostrinia
           nubilalis (European corn borer)
          Length = 497

 Score = 91.9 bits (218), Expect = 1e-17
 Identities = 46/92 (50%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
 Frame = -1

Query: 585 MERAMLGISIRYRMLNTEIRR-TGLTGXXXXXXXXXXXXASPICHRTDNRWGTKVLEWKP 409
           MERAMLG+S+R R+ N EIRR T +T             A  I  R D RWG KVLEW+P
Sbjct: 387 MERAMLGVSLRDRIRNEEIRRRTRVTDIARRIAKIKWQWAGHIARRADGRWGRKVLEWRP 446

Query: 408 RTGRCNVGSQPTR*IDDLIQIVGKDWMRKARD 313
           R GR +VG  PTR  DDL+++ G  WM+ A+D
Sbjct: 447 RAGRRSVGRPPTRWTDDLVKVAGSTWMQAAQD 478


>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 63.3 bits (147), Expect = 5e-09
 Identities = 28/30 (93%), Positives = 29/30 (96%)
 Frame = +3

Query: 582  PYYLEPLRSSTVRFQRSFLLRTIRLWNKLP 671
            PYYLEPLRSSTVRFQRSFL RTIRLWN+LP
Sbjct: 917  PYYLEPLRSSTVRFQRSFLPRTIRLWNELP 946


>UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein
           F28E10.3 [imported] - Caenorhabditis elegans; n=4;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           protein F28E10.3 [imported] - Caenorhabditis elegans -
           Strongylocentrotus purpuratus
          Length = 824

 Score = 50.0 bits (114), Expect = 5e-05
 Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
 Frame = -1

Query: 666 AYSIAVWYVAKKTSGNALSMNAAVPDNMERAMLGISIRYRMLNTEIR-RTGLTGXXXXXX 490
           +Y+   W +  K         AA   NMER++L I+ + R  N  IR +T +        
Sbjct: 303 SYAAETWTLTSKMERKL----AASQHNMERSILSITYKDRKTNKWIREQTKVQDILEAEK 358

Query: 489 XXXXXXASPICHRTDNRWGTKVLEWKPRTGRCNVGSQPTR*IDDLIQIVGK-DWMRKA 319
                 A  I  R DNRW + +  W P  G+ N G Q  R  D+L Q  G+ +W ++A
Sbjct: 359 RRKWNWAGHISRRNDNRWSSAITHWTPYEGKRNRGRQRKRWRDELQQFWGQTNWHQQA 416


>UniRef50_Q2U9U9 Cluster: Predicted protein; n=1; Aspergillus
           oryzae|Rep: Predicted protein - Aspergillus oryzae
          Length = 266

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 400 SSARFPLQNFCAPP-IVSAMAYRAGPLPLFPSNHLGFASQTSSSDFGIEHSI 552
           S    P Q++C PP I +A  Y   P P FP +     S T   D G +H+I
Sbjct: 128 SEGHMPSQSYCCPPSISAANEYGEEPSPHFPISLALDTSATFGIDTGFDHTI 179


>UniRef50_A6G028 Cluster: Putative uncharacterized protein; n=1;
           Plesiocystis pacifica SIR-1|Rep: Putative
           uncharacterized protein - Plesiocystis pacifica SIR-1
          Length = 1194

 Score = 33.9 bits (74), Expect = 3.6
 Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
 Frame = -1

Query: 333 WMR---KARDLKRMGWIRRDLHSALARHVLNNRLSA 235
           W+R    ARD KR+  +RR L +AL+R  +NNR+SA
Sbjct: 828 WLRADGSARDDKRVAALRRPLVAALSRGSINNRMSA 863


>UniRef50_Q0YLZ4 Cluster: Polysulphide reductase, NrfD; n=4;
           Bacteria|Rep: Polysulphide reductase, NrfD - Geobacter
           sp. FRC-32
          Length = 631

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
 Frame = +2

Query: 410 GFHSRTFVPHRLSVRWHIGLAHFHFFQAITLALPVKPVLRISVLSILYLIEMPNIARSIL 589
           G+HS  F P+ ++   H GLA       +TL +P++ +L +  L   +  EM  +A++I+
Sbjct: 249 GWHSTIFPPYFVAGAIHSGLA-----MVLTLLIPMRKLLHLERLIQRHHFEM--VAKTII 301

Query: 590 SGTAAFIDSAFP-EVFFATY 646
             TAA +  ++  EVF A Y
Sbjct: 302 L-TAAIVGYSYACEVFIAWY 320


>UniRef50_Q60GS8 Cluster: Tachykinin receptor; n=1; Ciona
           intestinalis|Rep: Tachykinin receptor - Ciona
           intestinalis (Transparent sea squirt)
          Length = 352

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
 Frame = +2

Query: 404 VRGFHSRTFVPHRLSVRWHIGLAHFHFFQAITLALPVKPVLRISVLSI--LYLIEMP--- 568
           V GF++     + L+  W+ G A  HF   + +   +  +L I+V+S+    +I  P   
Sbjct: 88  VIGFNTVFNFTYALNNDWYFGKAFCHFINFVPIGAVLASILSITVISLDRFVVIMYPLRR 147

Query: 569 ----NIARSILSGTAAF-IDSAFPEVFFATYHT 652
                 A+  ++G   F +  AFP+ FFAT  T
Sbjct: 148 RTSRKTAKMTIAGIWLFSLGVAFPQCFFATITT 180


>UniRef50_Q2GEF5 Cluster: Putative CDP-diacylglycerol--serine
           O-phosphatidyltransferase; n=1; Neorickettsia sennetsu
           str. Miyayama|Rep: Putative CDP-diacylglycerol--serine
           O-phosphatidyltransferase - Neorickettsia sennetsu
           (strain Miyayama)
          Length = 245

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +2

Query: 425 TFVPHRLSVRWHIGLAHFHFFQAITLALPVKPVLRISVLSILYLIEMP 568
           TF    ++V  ++  A    F  I +AL +KP L ISVL++ Y+  MP
Sbjct: 189 TFSLKNVAVPHYLESALIFLFVTIAVALILKPWLTISVLALCYICSMP 236


>UniRef50_Q10126 Cluster: Uncharacterized protein F52C9.6; n=7;
           Caenorhabditis elegans|Rep: Uncharacterized protein
           F52C9.6 - Caenorhabditis elegans
          Length = 279

 Score = 32.7 bits (71), Expect = 8.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 462 ICHRTDNRWGTKVLEWKPRTGRCNVGSQPTR*IDDL 355
           +  R D RW T + EW+P   +  VG  P R  D L
Sbjct: 206 VARRKDGRWTTLMTEWRPWNWKRYVGRTPMRWTDSL 241


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 713,306,282
Number of Sequences: 1657284
Number of extensions: 15214482
Number of successful extensions: 32781
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 31769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32763
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)