Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0274
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    27   2.5  
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||...    27   3.3  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   4.3  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    26   4.3  
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual             25   9.9  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   9.9  

>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 35   YL*WRGTLK*FRVNHHHSSALLPVI 109
            Y+ WR  L+ F +N  H SAL P++
Sbjct: 1300 YVNWRIALERFVINESHDSALYPLL 1324


>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 319

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 377 GWLPTLQRPVRGFHSRTFVPHRLSVRWHI 463
           GWL  L+ P +     T V H  SV W++
Sbjct: 129 GWLQGLRDPSKLSKKETLVAHHSSVLWYL 157


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 101  PVIWGQRI*QEYNIYACVIIRLLKSCIIFPL 193
            P  W  R+ Q + IYAC++  ++  CI  P+
Sbjct: 936  PYQWVYRVIQVF-IYACILTAVIIECIATPI 965


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 17/69 (24%), Positives = 34/69 (49%)
 Frame = +2

Query: 101  PVIWGQRI*QEYNIYACVIIRLLKSCIIFPLS*RTYSMKYIKILHADSLLFNTCLANAEC 280
            P I G +  Q Y+   C+++ +LK      +   TY+ +++++L    L ++   A+   
Sbjct: 801  PQIAGNKPCQRYHALLCILLDILKGYDNQIILNSTYN-EFVEVLRNHELPYSEWSAHYSA 859

Query: 281  RSLRIHPIL 307
               RI P+L
Sbjct: 860  LVNRISPVL 868


>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 264

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 459 CHRTDNRWGTKVLEWKPRT 403
           C R DNRW   + +W+  T
Sbjct: 140 CRRKDNRWFAAINKWQVMT 158


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1337

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 305  LFRSLAFRIQSLPTIWIRSSIYLVGWL 385
            L  SL   I +L   W+ + +Y VGWL
Sbjct: 1175 LLNSLMTTITTLEDRWLFALLYRVGWL 1201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,977,872
Number of Sequences: 5004
Number of extensions: 64942
Number of successful extensions: 176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)